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Report for CCDS36532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36532.1 Public Mus musculus 12 Ppp4r4 23 108 98 CCDS HistoryNCBI Gene:74521Re-query CCDS DB by CCDS ID:36532.1Re-query CCDS DB by GeneID:74521See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021631.11 ENSMUSP00000021631.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021631.11Link to Ensembl Protein Viewer:ENSMUSP00000021631.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021631Re-query CCDS DB by Protein ID:ENSMUSP00000021631
Original member Current member NCBI NM_028980.3 NP_083256.2 Accepted alive Link to Nucleotide Sequence:NM_028980.3Link to Protein Sequence:NP_083256.2Re-query CCDS DB by Nucleotide ID:NM_028980Re-query CCDS DB by Protein ID:NP_083256Link to BLAST:NP_083256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083256.2 875 Q8C0Y0-1 875 100% 0 0

Chromosomal Locations for CCDS 36532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103532620 103532742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103534071 103534144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103558368 103558470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103576281 103576428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103576835 103576908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103578992 103579098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103581379 103581486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103584056 103584177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103585707 103585829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103586951 103587120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103587437 103587556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103590779 103590856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103591527 103591610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103592996 103593178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103596391 103596496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103598101 103598248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103600364 103600508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103601363 103601404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103601488 103601562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103602951 103603020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103603972 103604058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103604967 103605060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103606901 103606971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103610533 103610680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103612808 103612832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGCATCCGCCGCCGCCCGACGCCGGCGTCGCGATGGATTTCGGGCAGAACAGCCTGTTTGGCTACATGG
AGGACCTGCAGGAGCTCACCATCATCGAGAGGCCGGTCCGCCGGAGCCTCAAGACACCAGAAGAAATAGA
AAGACTGACTGTTGATGAAGATCTCAGTGATATTGACAGGGCTGTTTATCTGCTCAGTGCTGGTCAAGAT
GTCCAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGATGCGACAGAATCCTACTGAGACACTTCGGA
GAGTCTTACCCAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGAGATGCAGCTAACGGCTGCAGTGTC
CTTTTTGACCATCCTTCAGGAAGAATCAATGTCAGTCCACACCTGTGCACACTCCTTCCTGCAAGTCATT
CTCCTGCACCTGGAGCACAGGGACACAGGTGTCAGCAATGCATGGCTGGAGACACTTCTCTCCGCAGTAG
AATTATTGCCAAAAGAAACCCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCA
AACCGTCCAGTCGCGTTTAGTTAGCTGTAAAATTTTAGGAAAAATAACCAACAAATTTGATGCCCATAGC
ATTAAGAGAGAAATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTGGAATATGAAGTTCGATCTTGTA
TGTGTCGCCAGTTAGAAAACATAGCTCAGGGCATTGGGGCAGAACTGACAAAGAATGTGGTGCTTCCCGA
ACTAATAGAACTCTCTAGGGACGAGAGTGGCAGTGTGCGGCTTGCTGCTTTTGAAACCTTGGTTAACATG
CTTGACATGTTCGATACAGATGACAGAAGTCAAACTATACTTCCCTTAGTGAAATCGTTCTGTGAAAAGT
CTTTCAAAGCAGATGAATCCATTCTGATTTCTTTATCATTTCATTTAGGAAAGCTATGCCATGGACTCTA
TGGAATTTTCACTCCAGATCAGCACTTGAGATTTTTGGAGTTTTATAAGAAACTTTGTACACTGGGTTTG
CAACAAGAAAATGGCCACAATGAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGAGAAGAAATATACTT
CAGTACGAAAGAACTGTGCTTACAACTTTCCGGCCATGATTGTTTTTGTTGATCCTAAAAACTTCCACAT
GGAACTCTACTCTACATTCTTCTGCCTTTGTCATGACCCTGAAGTGCCAGTCAGACACACTATTGCTATT
TGCTTTTATGAAGTATCTAAACTTCTGAATTCTGGAGTACATTTAATTCACAAAGAGCTGATAACATTGT
TACAAGATGAGTCACTGGAGGTTCTAGATGCTCTTATAAATCACCTTCCAGAAATCTTGGAACTTATGTC
TACTGGTGGAGAAAACAGTGTTCAAGAAAATAAGTTTTCCTCAGTGCCAGACTTGATTCCAGCACTCACA
GCTGCTGAGCAGCGAGCTGCAGCCTCCCTGAAGTGGAGGACCCACGAGAAGCTGCTGCAGAAGTACACCT
GTCTGCCTCATATCATATCGAGTGACCAGATTTATTACCGTTTCTTACAAAGAATGTTCACCATCATGAT
GACAAATAATGTCTTACCTGTCCAAAGGGCAGCTGCACGAACTCTATGCATTTTTCTACGATATAATCGT
AAACAAGAGCAGAGGCATGAAGTCATTCAAAAACTAATTGAACAGTTGGGCCAAGGAAAAAGTTATTGGA
ATAGACTTCGCTTTTTGGATACCTGTGAATTTATCATAGAGATATTTTCCAGATCATTTTTCTGCAAATA
TTTCTTTCTACCTGTTATTGAACTAACCCATGACCCAGTGGCAAATGTGAGAATGAAACTTTGCTACCTG
CTGCCCAAGGTGAAGTCTGCGCTGAAGATTCCTGCAGACATGCATCTCCTCCAGCAGCTAGAAATGTGTG
TGAGAAAGCTCCTGTGTCAAGAAAAAGATAAAGACGTCCTGGCTATTGTGAAGAAAACGGTATTAGAGTT
GGACAGAATGGAGATGTCTATGGATATGTTCCAGAAAAAAAACTATGAGAAAGATTTGTTGGATCAAGAG
AAAGAAAGAGAAGAGCTGCTGTTTTTGGAAATGGAACAGCTGGAGAAGGAGAAGCATCAGAGTGACGGGA
GGCTGGCCAGTGACAAAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAA
GAACTTGCCCATTTCTGTTCCTGGACCCTCCTCTAGCACTGCATCAACAAGCAAAGAAATCAAGAAATCC
AAATTGACTCGAAGCCAATCTTTTAATAATCAAGCTTTTCATGCAAAATATGGCACCTTAGACAAGTGTG
CTAGTAAAAGTTCCACCTTAGCACACACGTCTTCCGTCTCAGGGCTGGTGAGGACTGCCATGCTGTCACT
AACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCTTTTCTCCTAACCCTGTCATG
CCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGCCCC
GGAAGGCTACCTTAAAATCCAGAAAATCCAATCCTTAA

Translation (875 aa):
MHPPPPDAGVAMDFGQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIDRAVYLLSAGQD
VQGASVIANLPFLMRQNPTETLRRVLPKVREVLHVASVEMQLTAAVSFLTILQEESMSVHTCAHSFLQVI
LLHLEHRDTGVSNAWLETLLSAVELLPKETLRHEILNPLVSKAQLSQTVQSRLVSCKILGKITNKFDAHS
IKREILPLVKSLCQDVEYEVRSCMCRQLENIAQGIGAELTKNVVLPELIELSRDESGSVRLAAFETLVNM
LDMFDTDDRSQTILPLVKSFCEKSFKADESILISLSFHLGKLCHGLYGIFTPDQHLRFLEFYKKLCTLGL
QQENGHNESQIPSQIVEQEKKYTSVRKNCAYNFPAMIVFVDPKNFHMELYSTFFCLCHDPEVPVRHTIAI
CFYEVSKLLNSGVHLIHKELITLLQDESLEVLDALINHLPEILELMSTGGENSVQENKFSSVPDLIPALT
AAEQRAAASLKWRTHEKLLQKYTCLPHIISSDQIYYRFLQRMFTIMMTNNVLPVQRAAARTLCIFLRYNR
KQEQRHEVIQKLIEQLGQGKSYWNRLRFLDTCEFIIEIFSRSFFCKYFFLPVIELTHDPVANVRMKLCYL
LPKVKSALKIPADMHLLQQLEMCVRKLLCQEKDKDVLAIVKKTVLELDRMEMSMDMFQKKNYEKDLLDQE
KEREELLFLEMEQLEKEKHQSDGRLASDKSFEKKRRDSRTSTQSLSKNLPISVPGPSSSTASTSKEIKKS
KLTRSQSFNNQAFHAKYGTLDKCASKSSTLAHTSSVSGLVRTAMLSLTDDSFRTRNASSVPASFSPNPVM
PSTSRGPGNTADPKSSGSKDAQPRKATLKSRKSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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