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Report for CCDS36518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36518.1 Public Mus musculus 12 Kcnk10 23 108 98 CCDS HistoryNCBI Gene:72258Re-query CCDS DB by CCDS ID:36518.1Re-query CCDS DB by GeneID:72258See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221240.1 ENSMUSP00000152473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221240.1Link to Ensembl Protein Viewer:ENSMUSP00000152473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221240Re-query CCDS DB by Protein ID:ENSMUSP00000152473
Original member Current member NCBI NM_029911.5 NP_084187.2 Accepted alive Link to Nucleotide Sequence:NM_029911.5Link to Protein Sequence:NP_084187.2Re-query CCDS DB by Nucleotide ID:NM_029911Re-query CCDS DB by Protein ID:NP_084187Link to BLAST:NP_084187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084187.2 535 Q8BUW1-1 535 100% 0 0

Chromosomal Locations for CCDS 36518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98434807 98435427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98436192 98436334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98440592 98440778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98489905 98490065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98496193 98496310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98518498 98518832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98577786 98577828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTATTTTTCCTACATAGGTTACTTCTTTCTTCCTCCTTTGGTGGCCGTGCCTGCAGCAGCCCCACCAG
TGTGCCAGCCCAAGAGTGCCACTAACGGGCATCACCCTGTTCCTCGACTCTCCATTTCCTCTCGAGCCAC
GGTGGTAGCCAGGATGGAAGGCGCCTCCCAGGGAGGCCTGCAAACAGTTATGAAGTGGAAAACAGTGGTT
GCCATCTTCGTGGTGGTCGTGGTCTACCTCGTCACTGGTGGCCTTGTCTTCCGGGCCTTGGAACAGCCCT
TCGAGAGCAGTCAGAAGAACACAATCGCCTTGGAGAAGGCAGAATTCTTGAGAGATCACATCTGTGTGAG
TCCCCAGGAACTAGAGACACTGATTCAGCATGCACTCGATGCTGATAACGCGGGAGTCAGCCCAGTAGGA
AACTCTTCCAACAGCAGCAGTCACTGGGACCTTGGAAGTGCCTTCTTCTTTGCTGGGACAGTCATCACAA
CCATAGGGTATGGGAATATTGCTCCGAGCACTGAAGGAGGCAAAATCTTTTGTATTTTATATGCCATCTT
TGGGATCCCGCTTTTTGGTTTCTTATTGGCTGGAATTGGAGACCAACTTGGAACCATCTTTGGCAAAAGC
ATTGCAAGAGTGGAAAAGGTTTTTCGAAAGAAGCAAGTGAGCCAGACCAAGATCCGGGTCATCTCCACGA
TTCTCTTCATCTTGGCTGGCTGCATCGTGTTTGTGACCATCCCTGCTGTCATCTTTAAATACATCGAGGG
TTGGACCGCCTTGGAGTCCATCTACTTTGTGGTAGTCACGCTGACCACAGTAGGCTTTGGTGATTTTGTG
GCAGGGGGAAATGCTGGCATCAATTACCGAGAGTGGTACAAGCCGCTGGTGTGGTTTTGGATCCTTGTTG
GCCTTGCCTACTTTGCAGCTGTCCTCAGTATGATCGGAGACTGGCTGCGGGTTTTATCCAAAAAGACAAA
AGAAGAGGTTGGTGAGATCAAAGCCCACGCAGCTGAGTGGAAGGCTAATGTCACTGCTGAGTTCCGGGAG
ACGAGAAGGCGGCTCAGCGTTGAGATCCATGACAAGCTGCAACGGGCAGCCACTATCCGAAGTATGGAGC
GCCGGAGGCTGGGCTTGGACCAGAGGGCCCACTCACTGGACATGCTATCCCCTGAGAAGCGTTCTGTCTT
TGCAGCCCTGGACACAGGCCGTTTCAAGGCCTCATCGCAGGAGAGTATCAACAACAGACCCAACAACCTA
CGCCTTAAGGGGCCAGAACAGCTTACCAAACATGGGCAGGGCGCTTCTGAGGACAACATCATCAACAAGT
TTGGGTCCACCTCCAAACTCACAAAGAGGAAAAACAAAGATCTCAAAAAGACCTTACCCGAGGATGTTCA
GAAAATCTACAAAACCTTCCGGAATTACTCTCTGGATGAAGAGAAGAAAGAGGACGAGACAGAAAAGATG
TGTAACTCCGACAACTCCAGCACAGCCATGCTGACAGAGTGTATACAGCAGCAAGCTGAGATGGAGAACG
GAATGGTACCCACGGACACCAAAGACCAGGGGCTGGAGAACAATTCTTTACTTGAAGACAGAAACTAA

Translation (535 aa):
MYFSYIGYFFLPPLVAVPAAAPPVCQPKSATNGHHPVPRLSISSRATVVARMEGASQGGLQTVMKWKTVV
AIFVVVVVYLVTGGLVFRALEQPFESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAGVSPVG
NSSNSSSHWDLGSAFFFAGTVITTIGYGNIAPSTEGGKIFCILYAIFGIPLFGFLLAGIGDQLGTIFGKS
IARVEKVFRKKQVSQTKIRVISTILFILAGCIVFVTIPAVIFKYIEGWTALESIYFVVVTLTTVGFGDFV
AGGNAGINYREWYKPLVWFWILVGLAYFAAVLSMIGDWLRVLSKKTKEEVGEIKAHAAEWKANVTAEFRE
TRRRLSVEIHDKLQRAATIRSMERRRLGLDQRAHSLDMLSPEKRSVFAALDTGRFKASSQESINNRPNNL
RLKGPEQLTKHGQGASEDNIINKFGSTSKLTKRKNKDLKKTLPEDVQKIYKTFRNYSLDEEKKEDETEKM
CNSDNSSTAMLTECIQQQAEMENGMVPTDTKDQGLENNSLLEDRN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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