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Report for CCDS36462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36462.1 Public Mus musculus 12 Lrr1 23 108 98 CCDS HistoryNCBI Gene:69706Re-query CCDS DB by CCDS ID:36462.1Re-query CCDS DB by GeneID:69706See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110621.2 ENSMUSP00000106251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110621.2Link to Ensembl Protein Viewer:ENSMUSP00000106251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110621Re-query CCDS DB by Protein ID:ENSMUSP00000106251
Original member Current member NCBI NM_001081406.2 NP_001074875.1 Accepted alive Link to Nucleotide Sequence:NM_001081406.2Link to Protein Sequence:NP_001074875.1Re-query CCDS DB by Nucleotide ID:NM_001081406Re-query CCDS DB by Protein ID:NP_001074875Link to BLAST:NP_001074875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074875.1 422 D3YY91 422 100% 0 0

Chromosomal Locations for CCDS 36462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69168856 69169062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69171862 69171960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69174392 69175113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69178580 69178820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGAGGCTGCCCTGCGAGGTGGAGGTCCGTAGCTGTCATTTGCCAACCTTAGGGCTCAAGAGCCGAGGCA
AG
GGCGTGCGAGCGGTGGTGAGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGC
A
GAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTA
AGA
GAGAACATTGAGCAGCTCTTCACCAAATTTGTGGATGAGGGGAAAGCCACTGTCCGGCTAAAGGAGC
CT
CCTGTGGACATCTGTCTGAGTAAGGCCAATCCTGGCAATTTAAAGACTTTACTTTCAGCTATGAGACT
G
GCTCATAGAGGCTGTGACGTCAACACACCACTCTCAACACTAAAACCAGTGAAGACTTCAGAATTTGAA
AAA
TATAAAACCAAAATGGTTATCACATCCAAAAAGGATTATCCTCTAAGCAAGAACTTTCCATATTTTC
TG
GAACACCTTCAGGCTTCTTACTGTAGCCTTGCCCGAGTTGATATGCGTATGCTGTGCTTAAAAAATCT
T
ACGAAGTTAGACCTGAGTCACAACTGTATAAAAAAACTTCCAGCTACAATTGGAGACCTCACCCACCTT
CAA
GAGCTTAACCTTAATGACAATCAGCTGGAGACCTTTAGTGTGCCCTTGTGTACTTCCACACTCCAGA
AG
TCACTTCACAGTTTGGATCTCAGCAAGAACAAAATCAAAGCGCTCCCTGTGCAGTTTTGTCAATTCCG
G
GAACTTACTAACTTAAACCTTAATGATAATGAATTGATTCACCTTCCTTTCAAGATAGGACAGCTAACA
AAC
CTCCGTTTTCTATCAGCAGCTCGAAACAAACTTAGAAATCTACCCTCTGAATTTAAAATGTTATCCC
TG
GAGTACTTGGATCTTTTTGGGAATACTTTTGAAAAACCAGAAGTCATTCCAATTATAAAGCTTCAAGT
A
CCATTAACTTTACTGGAATCATGTGAACAAGCTGTGCTATTCTATAGGATTCCATATGGCCCTGATATA
ATT
CCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGTGGAAGATTTTGTCTCCAAT
CT
TTCATTCAAGGAACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTAT
G
GGAAGAACGGAAGCTCCTGTTGTCTCTTACTTTTGTTCTCTAACCTGTTTTGTAAAGTCCTCTGATATG
TTG
AACTAA


Translation (422 aa):
MRLPCEVEVRSCHLPTLGLKSRGKGVRAVVSLCQAPGRNELQPEARAEPGGHACLLVSTMKDRQGTSYKL
R
ENIEQLFTKFVDEGKATVRLKEPPVDICLSK
ANPGNLKTLLSAMRLAHRGCDVNTPLSTLKPVKTSEFE
K
YKTKMVITSKKDYPLSKNFPYFLEHLQASYCSLARVDMRMLCLKNLTKLDLSHNCIKKLPATIGDLTHL
Q
ELNLNDNQLETFSVPLCTSTLQKSLHSLDLSKNKIKALPVQFCQFRELTNLNLNDNELIHLPFKIGQLT
N
LRFLSAARNKLRNLPSEFKMLSLEYLDLFGNTFEKPEVIPIIKLQVPLTLLESCEQAVLFY
RIPYGPDI
I
PYHLCQDLDTAKTCVCGRFCLQSFIQGTTTMNLHSVAHTVVLVDSMGRTEAPVVSYFCSLTCFVKSSDM
L
N




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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