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Report for CCDS36445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36445.1 Public Mus musculus 12 Sptssa 23 108 98 CCDS HistoryNCBI Gene:104725Re-query CCDS DB by CCDS ID:36445.1Re-query CCDS DB by GeneID:104725See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056228.7 ENSMUSP00000053671.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056228.7Link to Ensembl Protein Viewer:ENSMUSP00000053671.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056228Re-query CCDS DB by Protein ID:ENSMUSP00000053671
Original member Current member NCBI NM_134054.2 NP_598815.2 Accepted alive Link to Nucleotide Sequence:NM_134054.2Link to Protein Sequence:NP_598815.2Re-query CCDS DB by Nucleotide ID:NM_134054Re-query CCDS DB by Protein ID:NP_598815Link to BLAST:NP_598815.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598815.2 71 Q8R207 71 100% 0 0

Chromosomal Locations for CCDS 36445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54646432 54646535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54656372 54656483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGGCGGGCATGGCGCTGGCGCGAGCATGGAAGCAGATGTCCTGGTTCTACTACCAGTACCTGCTGGTCA
CTGCGCTCTACATGCTGGAGCCCTGGGAGCGAACCGTGTTCAATTCGATGCTGGTTTCCGTGGTGGGGAT
GGCCCTGTACACTGGCTACGTCTTCATGCCCCAGCACATCATGGCTATTCTGCATTACTTTGAAATTGTA
CAGTGA

Translation (71 aa):
MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHIMAILHYFEIV
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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