NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36398.1 Public Mus musculus 12 Itsn2 23 108 98 CCDS HistoryNCBI Gene:20403Re-query CCDS DB by CCDS ID:36398.1Re-query CCDS DB by GeneID:20403See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062580.7 ENSMUSP00000052758.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062580.7Link to Ensembl Protein Viewer:ENSMUSP00000052758.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062580Re-query CCDS DB by Protein ID:ENSMUSP00000052758
Original member Current member EBI ENSMUST00000219007.1 ENSMUSP00000151900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219007.1Link to Ensembl Protein Viewer:ENSMUSP00000151900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219007Re-query CCDS DB by Protein ID:ENSMUSP00000151900
Original member Current member NCBI NM_011365.4 NP_035495.2 Accepted alive Link to Nucleotide Sequence:NM_011365.4Link to Protein Sequence:NP_035495.2Re-query CCDS DB by Nucleotide ID:NM_011365Re-query CCDS DB by Protein ID:NP_035495Link to BLAST:NP_035495.2

Chromosomal Locations for CCDS 36398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4613275 4613305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4624891 4624983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4626530 4626593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4627833 4627996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4629545 4629751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4629868 4629964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4630637 4630776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4632374 4632437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4632936 4633073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4633477 4633562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4634535 4634797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4635581 4635730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4636547 4636687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4637739 4637826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4639655 4639794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4649983 4650119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4652351 4652487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4653446 4653543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4658015 4658190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4658442 4658571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4661859 4662064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4664537 4664622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4666160 4666326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4671273 4671318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4671402 4671523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4672737 4672833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4673416 4673607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4697142 4697263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4700320 4700426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4701182 4701365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4706260 4706358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4706965 4707132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4707530 4707745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4708113 4708234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4708945 4709027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4711953 4712036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4712467 4712640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4713040 4713197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4977 nt):
ATGATGGCTCAGTTTCCCACAGCGATGAATGGAGGGCCAAATATGTGGGCTATTACATCTGAAGAACGTA
CTAAGCATGATAAACAGTTTGATAACCTCAAACCTTCAGGAGGTTACATAACAGGTGATCAAGCCCGTAC
TTTTTTCCTACAGTCAGGTCTGCCGGCCCCGGTTTTAGCTGAAATATGGGCCTTATCAGATCTGAACAAG
GATGGGAAGATGGACCAGCAAGAGTTCTCTATAGCTATGAAACTCATCAAGTTAAAGTTGCAGGGCCAAC
AGCTGCCTGTAGTCCTCCCTCCTATCATGAAACAACCCCCTATGTTCTCTCCACTAATCTCTGCTCGTTT
TGGGATGGGAAGCATGCCCAATCTGTCCATTCATCAGCCATTGCCTCCAGTTGCACCTATAGCAACACCC
TTGTCTTCTGCTACTTCAGGGACCAGTATTCCTCCCCTAATGATGCCTGCTCCCCTAGTGCCTTCTGTTA
GTACATCCTCATTACCAAATGGAACTGCCAGTCTCATTCAGCCTTTATCCATTCCTTATTCTTCTTCAAC
ATTGCCTCATGCATCATCTTACAGCCTGATGATGGGAGGATTTGGTGGTGCTAGTATCCAGAAGGCCCAG
TCTCTGATTGATTTAGGATCTAGTAGCTCAACTTCCTCAACTGCTTCCCTCTCAGGGAACTCACCTAAGA
CAGGGACCTCAGAGTGGGCAGTTCCTCAGCCTTCAAGATTAAAGTATCGGCAAAAATTTAATAGTCTAGA
CAAAGGCATGAGCGGATACCTCTCAGGTTTTCAAGCTAGAAATGCCCTTCTTCAGTCAAATCTCTCTCAA
ACTCAGCTAGCTACTATTTGGACTCTGGCTGACATCGATGGTGACGGACAGTTGAAAGCTGAAGAATTTA
TTCTGGCGATGCACCTCACTGACATGGCCAAAGCTGGACAGCCACTACCACTGACGTTGCCTCCCGAGCT
TGTCCCTCCATCTTTCAGAGGGGGAAAGCAAGTTGATTCTGTTAATGGAACTCTGCCTTCATATCAGAAA
ACACAAGAAGAAGAGCCTCAGAAGAAACTGCCAGTTACTTTTGAGGACAAACGGAAAGCCAACTATGAAC
GAGGAAACATGGAGCTGGAGAAGCGACGCCAAGTGTTGATGGAGCAGCAGCAGAGGGAGGCTGAACGCAA
AGCCCAGAAAGAGAAGGAAGAGTGGGAGCGGAAACAGAGAGAACTGCAAGAGCAAGAATGGAAGAAGCAG
CTGGAGTTGGAGAAACGCTTGGAGAAACAGAGAGAGCTGGAGAGACAGCGGGAGGAAGAGAGGAGAAAGG
AGATAGAAAGACGAGAGGCAGCAAAACAGGAGCTTGAGAGACAACGCCGTTTAGAATGGGAAAGACTCCG
TCGGCAGGAGCTGCTCAGTCAGAAGACCAGGGAACAAGAAGACATTGTCAGGCTGAGCTCCAGAAAGAAA
AGTCTCCACCTGGAACTGGAAGCAGTGAATGGAAAACATCAGCAGATCTCAGGCAGACTACAAGATGTCC
AAATCAGAAAGCAAACACAAAAGACTGAGCTAGAAGTTTTGGATAAACAGTGTGACCTGGAAATTATGGA
AATCAAACAACTTCAACAAGAGCTTAAGGAATATCAAAATAAGCTTATCTATCTGGTCCCTGAGAAGCAG
CTATTAAACGAAAGAATTAAAAACATGCAGCTCAGTAACACACCTGATTCAGGGATCAGTTTACTTCATA
AAAAGTCATCAGAAAAGGAAGAATTATGCCAAAGACTTAAAGAACAATTAGATGCTCTTGAAAAAGAAAC
TGCATCTAAGCTCTCAGAAATGGATTCATTTAACAATCAGCTGAAGGAACTCAGAGAAAGCTATAATACA
CAGCAGTTAGCCCTTGAACAACTTCATAAAATCAAACGTGACAAATTGAAGGAAATCGAAAGAAAAAGAT
TAGAGCAAATTCAAAAAAAGAAACTAGAAGATGAGGCTGCAAGGAAAGCAAAGCAAGGAAAAGAAAACTT
GTGGAGAGAAAGTATTAGAAAGGAAGAAGAGGAAAAGCAAAAACGACTCCAGGAAGAAAAGTCACAGGAC
AAAACTCAAGAAGAGGAACGAAAAGCTGAGGCAAAACAAAGTGAGACAGCCAGTGCTTTGGTGAATTACA
GAGCACTGTACCCTTTTGAAGCAAGAAACCATGATGAGATGAGTTTTAGTTCTGGGGATATAATTCAGGT
TGATGAAAAAACTGTAGGAGAGCCTGGTTGGCTTTATGGTAGTTTTCAGGGAAAGTTTGGCTGGTTCCCG
TGCAACTATGTAGAAAAAGTGCTGTCAAGTGAAAAAGCTCTGTCTCCTAAGAAGGCCTTACTTCCTCCTA
CAGTGTCTCTCTCTGCTACCTCAACTTCTTCCCAGCCACCAGCATCAGTGACTGATTATCACAATGTATC
CTTCTCAAACCTTACTGTTAATACAACATGGCAGCAGAAGTCAGCTTTTACCCGCACTGTGTCCCCTGGA
TCTGTGTCCCCCATTCACGGACAGGGGCAGGCTGTAGAAAACCTGAAAGCCCAGGCCCTTTGTTCCTGGA
CGGCAAAGAAGGAGAACCACCTGAACTTCTCAAAGCACGACGTCATCACTGTCCTGGAGCAGCAGGAAAA
CTGGTGGTTTGGGGAGGTGCACGGAGGAAGAGGATGGTTCCCCAAGTCTTATGTCAAGCTCATTCCTGGG
AATGAAGTACAGCGAGGAGAGCCAGAAGCTTTGTATGCAGCTGTGACTAAGAAACCTACCTCCACAGCCT
ATCCAGTTACCTCCACAGCCTATCCAGTTGGAGAAGACTACATTGCACTTTATTCATACTCAAGTGTAGA
GCCCGGGGATTTGACTTTCACTGAAGGTGAAGAAATTCTAGTGACCCAGAAAGATGGAGAGTGGTGGACA
GGAAGTATTGGAGAGAGAACTGGAATCTTCCCGTCCAACTACGTCAGACCAAAGGATCAAGAGAATTTTG
GGAATGCTAGCAAATCTGGAGCATCAAACAAAAAACCCGAGATCGCTCAAGTAACTTCAGCATATGCTGC
TTCAGGGACTGAGCAGCTCAGCCTTGCGCCAGGACAGTTAATATTAATCTTAAAGAAAAACACAAGCGGG
TGGTGGCAAGGAGAGCTACAGGCCAGAGGGAAGAAACGACAGAAGGGATGGTTTCCTGCCAGCCATGTAA
AGCTGCTAGGTCCAAGCAGTGAAAGAACCATGCCTACTTTTCACGCTGTATGTCAAGTGATTGCTATGTA
TGACTACATGGCGAATAACGAAGATGAGCTCAATTTCTCCAAAGGACAGCTGATTAATGTTATGAACAAA
GATGACCCTGACTGGTGGCAAGGAGAAACCAATGGTCTGACTGGTCTCTTTCCTTCAAACTATGTTAAGA
TGACAACAGACTCAGATCCAAGTCAACAGTGGTGTGCTGACCTCCAAGCCCTGGACACAATGCAGCCTAC
GGAGAGGAAGCGACAGGGCTACATTCACGAGCTCATTCAGACAGAGGAGCGGTACATGGACGACCTGCAG
CTGGTCATCGAGGTCTTCCAGAAACGGATGGCTGAGTCAGGCTTCCTCACTGAAGCAGACATGGCTCTGA
TCTTTGTGAACTGGAAAGAGCTCATCATGTCCAACACGAAGCTGCTGAGGGCCTTGCGGGTGAGGAAGAA
GACTGGGGGTGAGAAGATGCCAGTTCAGATGATTGGAGACATCCTGGCGGCAGAGCTGTCCCACATGCAG
GCCTACATCCGCTTCTGCAGCTGTCAGCTTAATGGGGCAACCCTGTTACAGCAGAAGACAGACGAGGACA
CGGACTTCAAGGAATTTCTAAAGAAGTTGGCATCAGACCCACGATGCAAAGGGATGCCCCTCTCCAGCTT
CCTGCTGAAGCCCATGCAGAGGATCACTCGCTACCCGCTGCTCATCCGAAGTATCCTGGAGAACACTCCA
CAGAGTCATGTTGACCACTCCTCCCTGAAGCTGGCCCTAGAACGTGCTGAGGAGCTGTGCTCTCAGGTGA
ACGAGGGAGTCCGGGAGAAGGAAAATTCAGACCGGCTGGAGTGGATCCAGGCACACGTGCAGTGCGAAGG
CTTGGCAGAGCAACTTATTTTCAACTCCCTCACCAACTGCCTGGGCCCCCGGAAGCTTCTGCACAGCGGG
AAGCTGTACAAGACCAAGAGCAATAAGGAGCTGCACGCCTTCCTCTTCAACGACTTCCTGCTGCTCACCT
ACCTGGTCAGGCAGTTTGCCGCCGCCTCTGGCCACGAGAAGCTCTTCAACTCCAAGTCCAGTGCTCAGTT
CCGGATGTACAAAACGCCCATTTTCCTGAATGAAGTGTTGGTGAAACTTCCCACAGACCCTTCCAGCGAT
GAGCCCGTCTTCCACATTTCCCACATTGATCGTGTGTACACACTCCGAACAGACAACATCAACGAGAGGA
CGGCCTGGGTCCAGAAGATCAAGGGTGCCTCAGAGCAGTACATCGACACTGAGAAGAAGAAACGGGAAAA
GGCTTACCAAGCCCGTTCTCAAAAGACTTCAGGTATTGGGCGTCTGATGGTGCATGTCATTGAAGCTACA
GAATTAAAAGCCTGCAAACCAAACGGGAAAAGTAATCCATACTGTGAAGTCAGCATGGGCTCCCAAAGCT
ATACCACCAGGACCCTGCAGGACACACTAAACCCCAAGTGGAACTTCAACTGCCAGTTCTTCATCAAGGA
TCTTTACCAGGACGTTCTGTGTCTCACTATGTTTGACAGAGACCAGTTTTCTCCAGATGACTTCTTGGGT
CGTACTGAAGTTCCAGTGGCAAAAATCCGAACAGAACAGGAAAGCAAAGGCCCCACCACCCGCCGACTAC
TACTGCACGAAGTCCCCACTGGAGAAGTCTGGGTCCGCTTTGACCTGCAACTTTTTGAACAAAAAACTCT
CCTTTGA

Translation (1658 aa):
MMAQFPTAMNGGPNMWAITSEERTKHDKQFDNLKPSGGYITGDQARTFFLQSGLPAPVLAEIWALSDLNK
DGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIHQPLPPVAPIATP
LSSATSGTSIPPLMMPAPLVPSVSTSSLPNGTASLIQPLSIPYSSSTLPHASSYSLMMGGFGGASIQKAQ
SLIDLGSSSSTSSTASLSGNSPKTGTSEWAVPQPSRLKYRQKFNSLDKGMSGYLSGFQARNALLQSNLSQ
TQLATIWTLADIDGDGQLKAEEFILAMHLTDMAKAGQPLPLTLPPELVPPSFRGGKQVDSVNGTLPSYQK
TQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVLMEQQQREAERKAQKEKEEWERKQRELQEQEWKKQ
LELEKRLEKQRELERQREEERRKEIERREAAKQELERQRRLEWERLRRQELLSQKTREQEDIVRLSSRKK
SLHLELEAVNGKHQQISGRLQDVQIRKQTQKTELEVLDKQCDLEIMEIKQLQQELKEYQNKLIYLVPEKQ
LLNERIKNMQLSNTPDSGISLLHKKSSEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKELRESYNT
QQLALEQLHKIKRDKLKEIERKRLEQIQKKKLEDEAARKAKQGKENLWRESIRKEEEEKQKRLQEEKSQD
KTQEEERKAEAKQSETASALVNYRALYPFEARNHDEMSFSSGDIIQVDEKTVGEPGWLYGSFQGKFGWFP
CNYVEKVLSSEKALSPKKALLPPTVSLSATSTSSQPPASVTDYHNVSFSNLTVNTTWQQKSAFTRTVSPG
SVSPIHGQGQAVENLKAQALCSWTAKKENHLNFSKHDVITVLEQQENWWFGEVHGGRGWFPKSYVKLIPG
NEVQRGEPEALYAAVTKKPTSTAYPVTSTAYPVGEDYIALYSYSSVEPGDLTFTEGEEILVTQKDGEWWT
GSIGERTGIFPSNYVRPKDQENFGNASKSGASNKKPEIAQVTSAYAASGTEQLSLAPGQLILILKKNTSG
WWQGELQARGKKRQKGWFPASHVKLLGPSSERTMPTFHAVCQVIAMYDYMANNEDELNFSKGQLINVMNK
DDPDWWQGETNGLTGLFPSNYVKMTTDSDPSQQWCADLQALDTMQPTERKRQGYIHELIQTEERYMDDLQ
LVIEVFQKRMAESGFLTEADMALIFVNWKELIMSNTKLLRALRVRKKTGGEKMPVQMIGDILAAELSHMQ
AYIRFCSCQLNGATLLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTP
QSHVDHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLHSG
KLYKTKSNKELHAFLFNDFLLLTYLVRQFAAASGHEKLFNSKSSAQFRMYKTPIFLNEVLVKLPTDPSSD
EPVFHISHIDRVYTLRTDNINERTAWVQKIKGASEQYIDTEKKKREKAYQARSQKTSGIGRLMVHVIEAT
ELKACKPNGKSNPYCEVSMGSQSYTTRTLQDTLNPKWNFNCQFFIKDLYQDVLCLTMFDRDQFSPDDFLG
RTEVPVAKIRTEQESKGPTTRRLLLHEVPTGEVWVRFDLQLFEQKTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH