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Report for CCDS36352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36352.1 Public Mus musculus 11 Sppl2c 23 108 98 CCDS HistoryNCBI Gene:237958Re-query CCDS DB by CCDS ID:36352.1Re-query CCDS DB by GeneID:237958See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107000.1 ENSMUSP00000102613.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107000.1Link to Ensembl Protein Viewer:ENSMUSP00000102613.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107000Re-query CCDS DB by Protein ID:ENSMUSP00000102613
Original member Current member NCBI NM_199019.2 NP_950184.2 Accepted alive Link to Nucleotide Sequence:NM_199019.2Link to Protein Sequence:NP_950184.2Re-query CCDS DB by Nucleotide ID:NM_199019Re-query CCDS DB by Protein ID:NP_950184Link to BLAST:NP_950184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950184.2 690 A2A6C4-1 690 100% 0 0

Chromosomal Locations for CCDS 36352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 104186376 104188448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGCATGCCTGGGTTCCCTCCACCCCTTGGGCTCACTCCTCCTCCTCTTCCTCCTCCTCCTCCTCAGCC
CCGAGGCCCGGGGAGAATACGGCCTGGTCCGAGTCGTGTCAAAGAACTGGAGCAAGGACTACTGTGTCCT
GTACAGCTCTGACTACGTCAACCTCCCCCGGGACCTGCACCATGCCCCACTTCTGTCCCTGCATGATGGC
ACCAAGACACCCTGGTGTCCAGATGAAGACTCTTTCCACCAGGCCCAGGACAGTTCCCCTAGACAGCGAC
CCCTGCACCAGACTACTACCATGGTCACGCGTGGCAACTGTAGCTTCTATGCCAAGGGCTGGCTGGCTCA
AGATCAAGGCGCCCAGGGGTTGCTCATTGTGAGCCGGGCCAGGAATCAACAGTGTTCAGACACCATCTCA
AAGCCCCAGGACCCCAGCAAGCCCTGGCCTGCCCTCACCATCCCAGTGGCCGTGCTCCGCTACACTGACA
TGTTGGACATTGTCAGCCACACTTACGGTGACACCGATGTCCGAGTAGCCATGTTTGCACCCCTCGAGCC
TGTTACTGACTATAACATGGCGATTATCTTCATCTTGGCAGTGGGTACTGTTGCTGCAGGTGGCTACTGG
GCTGGTTTGATGGAGGCAAACAAGCTGCAGAGGCGCCAGGCCCAAAGAGGAGGGGGGCTTGGTGGTCACA
ATCAACAACAAACAGTGGCAGCTGAGAGGTCCCAAAGGGCCTGGGAAGATGACGACTTTGAAGATGCACC
TATGGATTTCACACCAGCCATGACGGGCGCTGTGGTCACCATGTCCTGCTCCATCATGATCCTGCTGTAT
TTTTTCTATGACTGCTTTGTCTACGTCATGATTGGGATCTTTAGCCTGGGTGCCAGTACCGGCCTCTACA
GCTGCCTGGCACCCATACTGTGCCACCTGCCCCTATGGCGATACCAGTGGGTCTTGCCTGGACAACGGGT
TTCTGTAACATGGCCATTACTACTGCTGGCAGGCCTGTGTGCCATGGTGACTGTCCTCTGGGTCATCCAC
CGAAATGAGGACCATTGGGCATGGCTCCTGCAGGACACTTTGGGTGTCGCCTACTGCCTTTTTGTCCTGA
GGCGGGTACGGCTGCCCACGTTCAAGAACTGCACTTTGTTCCTGCTGGCCCTACTAGCCTTCGATGTCTT
CTTTGTCTTTATCACTCCCCTGTTCACCAAGACTGGTGAGAGCATTATGGTAGAAGTGGCATCAGGTCCA
GCAGATTCTTCAAGCCACGAGAGGTTACCAATGGTGCTCAAGGTGCCCCGGCTAAGCTTTTCCGCCTTGA
CGTTGTGCAACCAGCCCTTCTCCATCCTTGGCTTTGGGGACATTGTTGTCCCTGGCTTCCTAGTGGCCTA
CTGTCACCGCTTCGACATGCAAGTCCAATCTCGCCAGGTCTACTATATGGCCTGTACAGTGGCCTATGCC
GTGGGCCTGCTGGTCACCTTTGTCGCCATGATCCTCATGCAGATGGGCCAGCCTGCCCTGCTCTACTTAG
TGTCCAGCACTCTGCTCACCAGCCTTGCTGTGGCCACCTGCCGCCAAGAGTTCACCCTTTTCTGGACTGG
CCAGGGCAGAGCCAAGATTCCTGCTGAGCCTGTGGCACAGCCCTGCATTGCCTCTGCTGTGGGCTCCAAG
ATGAAGCTGGAGGATGCGAAGGATTCCCGTACAACCAACAGGTTTGAGCAGGCCGTTGATGGAGAGTCAG
GGGACTTAGAGAGCAGCACTGGGGACGATATGGCAGAGATGGTCACCCTATCTGAGGATGAAGCCACGAG
TCCAGAGGGCCACAGCGAGAGTTCTGAGGGCTGGAGTGACACCAACCTGGACCCCAATGAGCTACCCTCT
GGCTCCCCCATGGCCCTAGAGGCCATGTTGATCCCACTGATCCAACCAATCCCACACCCCTCCGAGCTGG
GCCACATCCGCACTCAATCTCGGGTCCATGATAGCAGCCTGCCCTGGATGGGGTTGCACAAGAGAAAGGG
CTTGAAGGTGAAGAAGAGTATGTCAGCCCAGGCTCCCCTATGA

Translation (690 aa):
MACLGSLHPLGSLLLLFLLLLLSPEARGEYGLVRVVSKNWSKDYCVLYSSDYVNLPRDLHHAPLLSLHDG
TKTPWCPDEDSFHQAQDSSPRQRPLHQTTTMVTRGNCSFYAKGWLAQDQGAQGLLIVSRARNQQCSDTIS
KPQDPSKPWPALTIPVAVLRYTDMLDIVSHTYGDTDVRVAMFAPLEPVTDYNMAIIFILAVGTVAAGGYW
AGLMEANKLQRRQAQRGGGLGGHNQQQTVAAERSQRAWEDDDFEDAPMDFTPAMTGAVVTMSCSIMILLY
FFYDCFVYVMIGIFSLGASTGLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPLLLLAGLCAMVTVLWVIH
RNEDHWAWLLQDTLGVAYCLFVLRRVRLPTFKNCTLFLLALLAFDVFFVFITPLFTKTGESIMVEVASGP
ADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDMQVQSRQVYYMACTVAYA
VGLLVTFVAMILMQMGQPALLYLVSSTLLTSLAVATCRQEFTLFWTGQGRAKIPAEPVAQPCIASAVGSK
MKLEDAKDSRTTNRFEQAVDGESGDLESSTGDDMAEMVTLSEDEATSPEGHSESSEGWSDTNLDPNELPS
GSPMALEAMLIPLIQPIPHPSELGHIRTQSRVHDSSLPWMGLHKRKGLKVKKSMSAQAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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