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Report for CCDS36351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36351.1 Public Mus musculus 11 Sppl2c 23 108 98 CCDS HistoryNCBI Gene:237958Re-query CCDS DB by CCDS ID:36351.1Re-query CCDS DB by GeneID:237958See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059448.7 ENSMUSP00000091453.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059448.7Link to Ensembl Protein Viewer:ENSMUSP00000091453.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059448Re-query CCDS DB by Protein ID:ENSMUSP00000091453
Original member Current member NCBI NM_001082535.1 NP_001076004.1 Accepted alive Link to Nucleotide Sequence:NM_001082535.1Link to Protein Sequence:NP_001076004.1Re-query CCDS DB by Nucleotide ID:NM_001082535Re-query CCDS DB by Protein ID:NP_001076004Link to BLAST:NP_001076004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076004.1 581 A2A6C4-2 581 100% 0 0

Chromosomal Locations for CCDS 36351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 104186376 104188096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104190717 104190741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGCATGCCTGGGTTCCCTCCACCCCTTGGGCTCACTCCTCCTCCTCTTCCTCCTCCTCCTCCTCAGCC
CCGAGGCCCGGGGAGAATACGGCCTGGTCCGAGTCGTGTCAAAGAACTGGAGCAAGGACTACTGTGTCCT
GTACAGCTCTGACTACGTCAACCTCCCCCGGGACCTGCACCATGCCCCACTTCTGTCCCTGCATGATGGC
ACCAAGACACCCTGGTGTCCAGATGAAGACTCTTTCCACCAGGCCCAGGACAGTTCCCCTAGACAGCGAC
CCCTGCACCAGACTACTACCATGGTCACGCGTGGCAACTGTAGCTTCTATGCCAAGGGCTGGCTGGCTCA
AGATCAAGGCGCCCAGGGGTTGCTCATTGTGAGCCGGGCCAGGAATCAACAGTGTTCAGACACCATCTCA
AAGCCCCAGGACCCCAGCAAGCCCTGGCCTGCCCTCACCATCCCAGTGGCCGTGCTCCGCTACACTGACA
TGTTGGACATTGTCAGCCACACTTACGGTGACACCGATGTCCGAGTAGCCATGTTTGCACCCCTCGAGCC
TGTTACTGACTATAACATGGCGATTATCTTCATCTTGGCAGTGGGTACTGTTGCTGCAGGTGGCTACTGG
GCTGGTTTGATGGAGGCAAACAAGCTGCAGAGGCGCCAGGCCCAAAGAGGAGGGGGGCTTGGTGGTCACA
ATCAACAACAAACAGTGGCAGCTGAGAGGTCCCAAAGGGCCTGGGAAGATGACGACTTTGAAGATGCACC
TATGGATTTCACACCAGCCATGACGGGCGCTGTGGTCACCATGTCCTGCTCCATCATGATCCTGCTGTAT
TTTTTCTATGACTGCTTTGTCTACGTCATGATTGGGATCTTTAGCCTGGGTGCCAGTACCGGCCTCTACA
GCTGCCTGGCACCCATACTGTGCCACCTGCCCCTATGGCGATACCAGTGGGTCTTGCCTGGACAACGGGT
TTCTGTAACATGGCCATTACTACTGCTGGCAGGCCTGTGTGCCATGGTGACTGTCCTCTGGGTCATCCAC
CGAAATGAGGACCATTGGGCATGGCTCCTGCAGGACACTTTGGGTGTCGCCTACTGCCTTTTTGTCCTGA
GGCGGGTACGGCTGCCCACGTTCAAGAACTGCACTTTGTTCCTGCTGGCCCTACTAGCCTTCGATGTCTT
CTTTGTCTTTATCACTCCCCTGTTCACCAAGACTGGTGAGAGCATTATGGTAGAAGTGGCATCAGGTCCA
GCAGATTCTTCAAGCCACGAGAGGTTACCAATGGTGCTCAAGGTGCCCCGGCTAAGCTTTTCCGCCTTGA
CGTTGTGCAACCAGCCCTTCTCCATCCTTGGCTTTGGGGACATTGTTGTCCCTGGCTTCCTAGTGGCCTA
CTGTCACCGCTTCGACATGCAAGTCCAATCTCGCCAGGTCTACTATATGGCCTGTACAGTGGCCTATGCC
GTGGGCCTGCTGGTCACCTTTGTCGCCATGATCCTCATGCAGATGGGCCAGCCTGCCCTGCTCTACTTAG
TGTCCAGCACTCTGCTCACCAGCCTTGCTGTGGCCACCTGCCGCCAAGAGTTCACCCTTTTCTGGACTGG
CCAGGGCAGAGCCAAGATTCCTGCTGAGCCTGTGGCACAGCCCTGCATTGCCTCTGCTGTGGGCTCCAAG
ATGAAGCTGGAGGATGCGAAGGATTCCCGTACAACCAACAGGATGCCTGAGGAAGATTTTGTGTGA

Translation (581 aa):
MACLGSLHPLGSLLLLFLLLLLSPEARGEYGLVRVVSKNWSKDYCVLYSSDYVNLPRDLHHAPLLSLHDG
TKTPWCPDEDSFHQAQDSSPRQRPLHQTTTMVTRGNCSFYAKGWLAQDQGAQGLLIVSRARNQQCSDTIS
KPQDPSKPWPALTIPVAVLRYTDMLDIVSHTYGDTDVRVAMFAPLEPVTDYNMAIIFILAVGTVAAGGYW
AGLMEANKLQRRQAQRGGGLGGHNQQQTVAAERSQRAWEDDDFEDAPMDFTPAMTGAVVTMSCSIMILLY
FFYDCFVYVMIGIFSLGASTGLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPLLLLAGLCAMVTVLWVIH
RNEDHWAWLLQDTLGVAYCLFVLRRVRLPTFKNCTLFLLALLAFDVFFVFITPLFTKTGESIMVEVASGP
ADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDMQVQSRQVYYMACTVAYA
VGLLVTFVAMILMQMGQPALLYLVSSTLLTSLAVATCRQEFTLFWTGQGRAKIPAEPVAQPCIASAVGSK
MKLEDAKDSRTTNRMPEEDFV


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 Genome Browser Links:   Ensembl Genome Browser
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