NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36301.1 Public Mus musculus 11 Gsdma2 23 108 98 CCDS HistoryNCBI Gene:76758Re-query CCDS DB by CCDS ID:36301.1Re-query CCDS DB by GeneID:76758See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093938.9 ENSMUSP00000091470.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093938.9Link to Ensembl Protein Viewer:ENSMUSP00000091470.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093938Re-query CCDS DB by Protein ID:ENSMUSP00000091470
Original member Current member NCBI NM_001363220.1 NP_001350149.1 Accepted alive Link to Nucleotide Sequence:NM_001363220.1Link to Protein Sequence:NP_001350149.1Re-query CCDS DB by Nucleotide ID:NM_001363220Re-query CCDS DB by Protein ID:NP_001350149Link to BLAST:NP_001350149.1
Original member Current member NCBI NM_029727.3 NP_084003.2 Accepted alive Link to Nucleotide Sequence:NM_029727.3Link to Protein Sequence:NP_084003.2Re-query CCDS DB by Nucleotide ID:NM_029727Re-query CCDS DB by Protein ID:NP_084003Link to BLAST:NP_084003.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350149.1 443 Q32M21-1 443 100% 0 0
NP_084003.2 443 Q32M21-1 443 100% 0 0

Chromosomal Locations for CCDS 36301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98649054 98649267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98649471 98649651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98650844 98651006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98651974 98652070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98652541 98652630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98654869 98655023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98655491 98655605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98657224 98657297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98657513 98657755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGTCTATGTTTGAGGATGTCACCCGGGCCCTGGCTAGACAGCTGAACCCTCGAGGGGATCTGACACCCC
TAGACAGCCTCATCGACTTCAAACGCTTCCATCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACACT
GTTCTGGGGAGCCCGCTATGTGCGCACCGACTACACTCTCCTGGATGTGCTGGAGCCGGGCAGCTCCCCC
TCAGATCCAACACTCCTTGGCAATTTTAGCTTTAAGAATATGCTGGATGTCAGAGTAGAGGGAGATGTGG
AGGTGCCAACAATGATGAAGGTAAAGGGGACTGTGGGCCTGTCACAAAGCAGCACGCTGGAGGTACAGAT
GCTCAGTGTGGCTCCCACGGCTCTGGAGAACTTGCACATGGAGAGGAAACTGTCAGCAGACCACCCGTTC
CTGAAGGAGATGCGGGAATACAAGCAAAACCTGTATGTGGTGATGGAGGTGGTGAAAGCCAAGCAGGAAG
TCACTCTGAAGCGAGCTAGCAACGCAATTTCCAAATTCTCTCTCAACCTTCCCTCACTGGGACTACAGGG
ATCCGTGAACCACAAGGAGGCTGTAACCATCCCCAAGGGCTGTGTTCTGGCCTATCGAGTGAGACAACTG
ATCATCTATGGGAAAGATGAGTGGGGCATTCCATACATTTGTACTGACAACATGCCAACCTTTAACCCCC
TGTGTGTGCTTCAGAGACAAGGCAGTACTGTCCAGATGATATCTGGGGAGATGCACGAAGACTTCAAGAC
ATTAAAGAAAGAGGTTCAGCAAGAGACTCAAGAAGTGGAGAAGTTGAGTCCAGTGGGGCGAAGCTCCCTA
CTCACTTCCCTCAGCCATCTCCTAGGAAAGAAGAAAGAGCTCCAGGACCTTGAGCAGATGCTTGAAGGGG
CTCTAGACAAGGGACACGAAGTGACCCTTGAAGCACTCCCCAAAGATGTCCTGCTGTTAAAGGACGCTAT
GGACGCCATCCTCTACTTCCTCGGGGCTCTGACAGAGCTAAGTGAAGAACAACTGAAGATTCTAGTAAAA
TCCTTGGAGAACAAGGTCCTACCGGTGCAACTGAAGCTGGTTGAGAGCATCTTGGAACAGAACTTCCTGC
AAGATAAAGAGGATGTTTTCCCCCTGCGACCTGATCTGCTCTCCTCCCTCGGGGAGGAGGACCAGATTCT
AACAGAAGCACTGGTGGGACTAAGCGGCCTGGAAGTCCAGAGATCAGGGCCCCAGTACACGTGGAATCCA
GACACTTGTCACAACCTCTGTGCCCTCTATGCTGGCCTCTCCCTCCTTCACCTGCTAAGCAGGGATTCCT
AA

Translation (443 aa):
MSMFEDVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDVLEPGSSP
SDPTLLGNFSFKNMLDVRVEGDVEVPTMMKVKGTVGLSQSSTLEVQMLSVAPTALENLHMERKLSADHPF
LKEMREYKQNLYVVMEVVKAKQEVTLKRASNAISKFSLNLPSLGLQGSVNHKEAVTIPKGCVLAYRVRQL
IIYGKDEWGIPYICTDNMPTFNPLCVLQRQGSTVQMISGEMHEDFKTLKKEVQQETQEVEKLSPVGRSSL
LTSLSHLLGKKKELQDLEQMLEGALDKGHEVTLEALPKDVLLLKDAMDAILYFLGALTELSEEQLKILVK
SLENKVLPVQLKLVESILEQNFLQDKEDVFPLRPDLLSSLGEEDQILTEALVGLSGLEVQRSGPQYTWNP
DTCHNLCALYAGLSLLHLLSRDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH