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Report for CCDS36228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36228.1 Public Mus musculus 11 Myo1c 23 108 98 CCDS HistoryNCBI Gene:17913Re-query CCDS DB by CCDS ID:36228.1Re-query CCDS DB by GeneID:17913See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108431.2 ENSMUSP00000104069.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108431.2Link to Ensembl Protein Viewer:ENSMUSP00000104069.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108431Re-query CCDS DB by Protein ID:ENSMUSP00000104069
Original member NCBI NM_001080775.1 NP_001074244.1 Updated not alive Link to Nucleotide Sequence:NM_001080775.1Link to Protein Sequence:NP_001074244.1Re-query CCDS DB by Nucleotide ID:NM_001080775Re-query CCDS DB by Protein ID:NP_001074244
Current member NCBI NM_001080775.2 NP_001074244.1 Accepted alive Link to Nucleotide Sequence:NM_001080775.2Link to Protein Sequence:NP_001074244.1Re-query CCDS DB by Nucleotide ID:NM_001080775Re-query CCDS DB by Protein ID:NP_001074244Link to BLAST:NP_001074244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074244.1 1044 Q9WTI7-3 1044 100% 0 0

Chromosomal Locations for CCDS 36228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75656184 75656201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75657492 75657647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75657753 75657868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75658352 75658550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75658639 75658719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75660171 75660350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75660433 75660531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75660899 75661012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75661097 75661168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75661495 75661614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75661734 75661816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75662022 75662127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75662235 75662315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75662572 75662663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75665518 75665612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75665693 75665739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75665837 75665917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75668181 75668286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75668410 75668527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75669008 75669121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75669198 75669274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75669781 75669849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75669947 75670031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75670131 75670290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75670543 75670626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75671193 75671286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75671380 75671435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75671587 75671722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75671805 75671875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75671958 75672055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75672152 75672251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75672610 75672636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3135 nt):
ATGCGCTACCGGGCATCGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCC
GAGACCGGGTAGGGGTGCAGGACTTTGTCCTGCTGGAGAATTTCACCAGTGAGGCTGCCTTCATTGAGAA
CCTCCGGCGGCGGTTCCGGGAGAACCTCATTTATACCTACATCGGTCCTGTCCTAGTCTCTGTCAATCCC
TACCGAGACCTACAGATCTACAGCCGGCAGCATATGGAACGCTACCGTGGTGTCAGTTTCTATGAAGTAC
CACCTCATTTGTTTGCAGTGGCTGACACTGTATACCGGGCACTTCGTACTGAGCGTCGGGACCAGGCAGT
GATGATTTCTGGAGAGAGTGGGGCAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTTCTATGCAGAG
ACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTGCGAGACCGCCTGTTGCAGAGCAACCCCGTGTTAGAGG
CCTTTGGGAATGCCAAGACTCTCCGCAACGATAACTCCAGCCGGTTTGGAAAGTACATGGATGTGCAGTT
TGACTTCAAGGGTGCCCCCGTGGGAGGCCACATTCTCAGTTACCTCCTGGAAAAGTCCCGGGTGGTGCAC
CAAAATCACGGAGAGCGGAACTTCCACGTCTTTTACCAGCTACTGGAGGGGGGCGAGGAGGAGACTCTCC
GTCGGCTGGGCTTGGAACGGAACCCCCAGAGCTACTTGTACCTGGTGAAGGGCCAGTGTGCCAAGGTCTC
CTCCATCAACGACAAGAGTGACTGGAAGGTTATGAGGAAGGCGCTGTCCGTCATTGACTTCACTGAGGAT
GAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCGTCCTACATCTGGGCAACATCCACTTTGCTGCTGACG
AGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCTCCTTGGTGTGGAAGG
TACAACACTTAGGGAAGCCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCTGAGCCCACTG
AACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACATTCACCTGGC
TGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAGCTGGCGAAGCACCACGGT
TCTTGGGCTCCTGGACATTTACGGCTTTGAAGTGTTTCAGCATAACAGCTTCGAGCAGTTCTGCATCAAC
TACTGCAATGAGAAGCTGCAGCAGCTCTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGG
CTGAGGGCATCGCGTGGGAACCTGTCCAGTACTTCAACAACAAGATCATCTGTGACCTGGTAGAGGAGAA
GTTCAAGGGCATCATCTCCATCTTGGATGAAGAGTGCCTGCGTCCTGGGGAGGCCACGGACCTGACCTTT
CTGGAGAAGTTGGAGGACACTGTCAAGCCCCACCCTCACTTCCTGACGCACAAGCTCGCTGACCAGAAGA
CCAGGAAATCTCTAGACCGAGGGGAGTTCCGCCTTCTGCATTATGCTGGAGAGGTGACCTACAGTGTGAC
TGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGAAC
CCCATCATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGACGGTGGCCACCC
AGTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCTGAGGTCTAAGGAGCCTGCCTATATCCGGTGCAT
CAAGCCAAACGACGCCAAGCAGCCGGGTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGAAGTACCTG
GGACTGATGGAGAATCTGCGCGTGCGCAGAGCTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCCTGC
AGAGGTACAAGTCACTGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGT
GTTGGTCAGACACCTCGGCTACAAGCCAGAAGAGTACAAAATGGGCAGGACTAAGATCTTCATCCGATTT
CCCAAGACCTTGTTTGCCACAGAGGACTCCCTGGAAGTCCGGCGGCAGAGTCTAGCCACCAAGATCCAGG
CGGCCTGGAGGGGCTTTCATTGGCGACAGAAATTTCTCCGGGTGAAGCGATCAGCCATCTGTATCCAGTC
ATGGTGGCGTGGCACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGA
CTCATCCGTGGCTTCATTTTGCGCCATTCACCCCGGTGCCCTGAGAATGCCTTCTTCTTGGACCACGTGC
GCGCCTCATTTTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTTCTGGACACCTCCTGGCCCACACC
CCCACCTGCCCTGAGAGAGGCCTCAGAACTGCTACGGGAACTGTGCATGAAGAACATGGTGTGGAAGTAC
TGCCGGAGCATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAGTGAAATTTTCAAGG
GCAAGAAGGACAACTACCCCCAGAGTGTCCCCAGACTCTTCATTAGCACACGGCTTGGCACAGAGGAGAT
CAGCCCCAGAGTGCTTCAATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGTGGTAAAATACGAC
CGTAAGGGTTACAAGCCTCGCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGGTCATTGTGGAGGATG
CTAAAGTCAAGCAGAGAATTGATTATGCCAACCTAACCGGAATCTCTGTCAGTAGCCTGAGTGATAGCCT
ATTTGTGCTTCACGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGTGGTGCTGCAGAGTGATCATGTG
ATCGAGACACTAACCAAGACGGCCCTCAGTGCTGACCGCGTGAACAATATCAACATCAACCAGGGCAGCA
TAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATCATTGACTTCACATCGGGCTCAGAGCTTCTCATCAC
CAAGGCTAAGAATGGCCACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGGTGA

Translation (1044 aa):
MRYRASALGSDGVRVTMESALTARDRVGVQDFVLLENFTSEAAFIENLRRRFRENLIYTYIGPVLVSVNP
YRDLQIYSRQHMERYRGVSFYEVPPHLFAVADTVYRALRTERRDQAVMISGESGAGKTEATKRLLQFYAE
TCPAPERGGAVRDRLLQSNPVLEAFGNAKTLRNDNSSRFGKYMDVQFDFKGAPVGGHILSYLLEKSRVVH
QNHGERNFHVFYQLLEGGEEETLRRLGLERNPQSYLYLVKGQCAKVSSINDKSDWKVMRKALSVIDFTED
EVEDLLSIVASVLHLGNIHFAADEDSNAQVTTENQLKYLTRLLGVEGTTLREALTHRKIIAKGEELLSPL
NLEQAAYARDALAKAVYSRTFTWLVRKINRSLASKDAESPSWRSTTVLGLLDIYGFEVFQHNSFEQFCIN
YCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQYFNNKIICDLVEEKFKGIISILDEECLRPGEATDLTF
LEKLEDTVKPHPHFLTHKLADQKTRKSLDRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKETMCSSMN
PIMAQCFDKSELSDKKRPETVATQFKMSLLQLVEILRSKEPAYIRCIKPNDAKQPGRFDEVLIRHQVKYL
GLMENLRVRRAGFAYRRKYEAFLQRYKSLCPETWPMWAGRPQDGVAVLVRHLGYKPEEYKMGRTKIFIRF
PKTLFATEDSLEVRRQSLATKIQAAWRGFHWRQKFLRVKRSAICIQSWWRGTLGRRKAAKRKWAAQTIRR
LIRGFILRHSPRCPENAFFLDHVRASFLLNLRRQLPRNVLDTSWPTPPPALREASELLRELCMKNMVWKY
CRSISPEWKQQLQQKAVASEIFKGKKDNYPQSVPRLFISTRLGTEEISPRVLQSLGSEPIQYAVPVVKYD
RKGYKPRPRQLLLTPSAVVIVEDAKVKQRIDYANLTGISVSSLSDSLFVLHVQREDNKQKGDVVLQSDHV
IETLTKTALSADRVNNININQGSITFAGGPGRDGIIDFTSGSELLITKAKNGHLAVVAPRLNSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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