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Report for CCDS36199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36199.1 Public Mus musculus 11 Spem1 23 108 98 CCDS HistoryNCBI Gene:74288Re-query CCDS DB by CCDS ID:36199.1Re-query CCDS DB by GeneID:74288See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045771.6 ENSMUSP00000037500.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045771.6Link to Ensembl Protein Viewer:ENSMUSP00000037500.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045771Re-query CCDS DB by Protein ID:ENSMUSP00000037500
Original member Current member NCBI NM_028855.1 NP_083131.1 Accepted alive Link to Nucleotide Sequence:NM_028855.1Link to Protein Sequence:NP_083131.1Re-query CCDS DB by Nucleotide ID:NM_028855Re-query CCDS DB by Protein ID:NP_083131Link to BLAST:NP_083131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083131.1 310 Q5F289 310 100% 0 0

Chromosomal Locations for CCDS 36199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69820904 69821634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69821806 69821863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69821957 69822100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCCATGGCTGAGCGGCCTCGGCCTGGGTGGGCCTCGTATCAAAACCCCAACATCAACAACTGCCAGG
ACATGGGAAACTCCATTCTGCTGCTCTTGGGTCTTATCGTCTGTATTAACATTGGCATCAATTTGGTGAC
CCTGCTCTGGAGCCGAATCCGCATCCTCTTACACCGAATGTTCCATATCATTTGTGAAAAAGAAACCAGT
ACTTCACTTGGGAAGCTGGTCCAGCCCTTGAGGAAGCAGACCTACCCCAAAGTCCATCTTCGATGTACCA
TGGACCCTGTGAAGATGACTGTGACCCCCCCACCCACTCGTCGTCGTTACCGCCATCGAGCGCCTCCATC
TCGCCGTGCCCGCTGCCCCATAGCTTGGGCCCCTGATACTGATGATGAGAAACCTCCACATCAGCACCCT
GCAATCTGTTCCCGCCACTGGAATGACTCTAAGGATTGGGAAGGCTTTCAATCTATGCAGGAGGTGTGGG
AACCTTGGACTCAGGATGGTCTAGAGCAACCTCCCCAGACCATCCGCTTCCAGCCAGCAGTAGAGGCCAG
GCCTCTCAAATCGGAAATCCGGTCAGACCAGGGCCTAGAGGCCTATGTGTATACTGTAAATCCTCCACCT
CCCAGTCCAGAGGCTTTGAGCCATAAAAACAATGCGGCAGGGTCAGGGGGATGTGTTGAGGGTGAGCAAG
CACAGGGCCAGCCTGTCTCACCATCCTTTCTGGGTCCAGCAAATGTCCCTGAAATACCCCGGCGCCATTC
ATCAGGCCGAATAGTCTATGATGCCCGAGATGTGAGGAGAAGGTTACGAGAACTCACCCAGGAGGTGGAG
GCTCTGTCCCACTGTTACCCCTTGGTCTCTGGATCCAGCGCAGCTGAGGGGACAGGCAAAGATTGGGTGT
ATCGTCCCCTGAAGGGAAGGTGA

Translation (310 aa):
MAMAERPRPGWASYQNPNINNCQDMGNSILLLLGLIVCINIGINLVTLLWSRIRILLHRMFHIICEKETS
TSLGKLVQPLRKQTYPKVHLRCTMDPVKMTVTPPPTRRRYRHRAPPSRRARCPIAWAPDTDDEKPPHQHP
AICSRHWNDSKDWEGFQSMQEVWEPWTQDGLEQPPQTIRFQPAVEARPLKSEIRSDQGLEAYVYTVNPPP
PSPEALSHKNNAAGSGGCVEGEQAQGQPVSPSFLGPANVPEIPRRHSSGRIVYDARDVRRRLRELTQEVE
ALSHCYPLVSGSSAAEGTGKDWVYRPLKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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