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Report for CCDS36171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36171.1 Public Mus musculus 11 Tom1l2 23 108 98 CCDS HistoryNCBI Gene:216810Re-query CCDS DB by CCDS ID:36171.1Re-query CCDS DB by GeneID:216810See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095254.11 ENSMUSP00000092884.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095254.11Link to Ensembl Protein Viewer:ENSMUSP00000092884.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095254Re-query CCDS DB by Protein ID:ENSMUSP00000092884
Original member Current member NCBI NM_001039092.4 NP_001034181.1 Accepted alive Link to Nucleotide Sequence:NM_001039092.4Link to Protein Sequence:NP_001034181.1Re-query CCDS DB by Nucleotide ID:NM_001039092Re-query CCDS DB by Protein ID:NP_001034181Link to BLAST:NP_001034181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034181.1 487 Q5SRX1-2 487 100% 0 0

Chromosomal Locations for CCDS 36171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60230093 60230241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60231101 60231137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60241818 60241893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60242708 60242825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60245062 60245185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60245636 60245684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60248931 60249064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60258856 60258972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60261055 60261213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60262649 60262783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60270318 60270467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60274924 60275002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60280199 60280283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60352757 60352808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAGTTCCTGCTGGGGAATCCGTTCAGCACCCCTGTAGGGCAGTGTCTTGAGAAGGCAACAGATGGCT
CCCTGCAGAGCGAGGACTGGACACTGAATATGGAGATCTGTGACATCATCAACGAGACAGAGGAAGGGCC
AAAGGATGCCATCCGGGCTCTAAAGAAGCGGCTTAGTGGGAACCGAAACTACAGAGAAGTGATGTTGGCC
CTGACGGTGCTGGAGACTTGTGTGAAGAACTGTGGCCACCGCTTTCATCTCCTCGTGGCCAACCGAGACT
TCATCGACAGCGTTCTGGTCAAAATTATCTCTCCCAAGAATAACCCTCCCACTATCGTCCAGGACAAAGT
GCTGGCTCTAATTCAGGCATGGGCAGATGCCTTTAGGAGCAGTCCTGACCTCACAGGTGTTGTGCACATA
TATGAAGAACTGAAGAGGAGGGGGATTGAGTTCCCCATGGCGGACTTGGACGCCCTGTCTCCTATCCACA
CACCCCAGCGGAGTGTCCCAGAAATGGATCCAGCTGCCACCATTCCCAGGTCCCAGACACAGCCCAGGAC
AACCGCTGGCACCTATTCCTCACCTCCTCCAGCTTCCTACTCTACTCTGCAGGCCCCGGCTCTGAGTGTG
ACGGGCCCCATCACAGCCAATTCAGAACAGATTGCCAGGCTGCGCAGTGAGCTGGACATTGTTCGGGGAA
ACACAAAAGTCATGTCTGAGATGTTAACAGAAATGGTCCCTGGGCAGGAGGATTCTTCTGATCTGGAACT
ACTACAGGAATTGAACAGGACCTGCCGAGCCATGCAGCACCGCATAGTGGAGCTCATCTCCCGAGTGTCC
AATGAGGAGGTCACCGAGGAGCTGCTGCACGTCAACGATGACCTCAACAATGTCTTCCTCCGCTATGAGA
GGTTCGAGAGGTACAGGTCCGGCCGATCCGTTCAGAATGCCAGCAATGGAGTACTAAGCGAAGTTACTGA
AGACAACTTAATAGACCTGGGCCCCGGCTCCCCCGCTGTGGTTAGCCCCATGGTGGGGAGCACAGCACCC
CCATCTTCTCTCTCCTCCCAACTCGCAGGCTTGGACTTGGGGACAGAGAGTGTCAGTGGCACCCTCAGTT
CACTTCAGCAGTGCAAGCCACAAGATGGTTTTGACATGTTTGCCCAGACCAGAGGAAACTCCTTGGCTGA
ACAGCGAAAAACGGTCACCTATGAGGATCCCCAGGCTGTTGGAGGACTCGCTTCTGCACTTGACAATCGG
AAACAGAACTCAGAAATGAAGGGTGACGACCTAGAAGAGGGTGTCACAAGTGAAGAGTTCGATAAGTTCC
TGGAAGAAAGAGCCAAAGCTGCAGAAACAGTTCCAGACCTGCCCTCACCCCCGACAGAGGCCCCTGCACC
AGCCTCAAACACTTCAACCCGGAAGAAGCCAGAGCGCTCCGACGATGCGCTCTTTGCCCTGTGA

Translation (487 aa):
MEFLLGNPFSTPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLA
LTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVHI
YEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSV
TGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVS
NEEVTEELLHVNDDLNNVFLRYERFERYRSGRSVQNASNGVLSEVTEDNLIDLGPGSPAVVSPMVGSTAP
PSSLSSQLAGLDLGTESVSGTLSSLQQCKPQDGFDMFAQTRGNSLAEQRKTVTYEDPQAVGGLASALDNR
KQNSEMKGDDLEEGVTSEEFDKFLEERAKAAETVPDLPSPPTEAPAPASNTSTRKKPERSDDALFAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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