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Report for CCDS3617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3617.1 Public Homo sapiens 4 KLHL8 24 110 108 CCDS HistoryNCBI Gene:57563Re-query CCDS DB by CCDS ID:3617.1Re-query CCDS DB by GeneID:57563See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273963.10 ENSP00000273963.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273963.10Link to Ensembl Protein Viewer:ENSP00000273963.5Re-query CCDS DB by Nucleotide ID:ENST00000273963Re-query CCDS DB by Protein ID:ENSP00000273963
Original member Current member EBI ENST00000512111.1 ENSP00000424131.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512111.1Link to Ensembl Protein Viewer:ENSP00000424131.1Re-query CCDS DB by Nucleotide ID:ENST00000512111Re-query CCDS DB by Protein ID:ENSP00000424131
Original member Current member NCBI NM_001292003.2 NP_001278932.1 Accepted alive Link to Nucleotide Sequence:NM_001292003.2Link to Protein Sequence:NP_001278932.1Re-query CCDS DB by Nucleotide ID:NM_001292003Re-query CCDS DB by Protein ID:NP_001278932Link to BLAST:NP_001278932.1
Original member Current member NCBI NM_020803.5 NP_065854.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020803.5Link to Protein Sequence:NP_065854.3Re-query CCDS DB by Nucleotide ID:NM_020803Re-query CCDS DB by Protein ID:NP_065854Link to BLAST:NP_065854.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278932.1 620 Q9P2G9-1 620 100% 0 0
NP_065854.3 620 Q9P2G9-1 620 100% 0 0

Chromosomal Locations for CCDS 3617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87163519 87163642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87163878 87164079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87170079 87170238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87170447 87170615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87176757 87176868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87178477 87178620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87183203 87183389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87185251 87185799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87195324 87195539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGCTTCAGATTCTATGAGTAGTAAACAAGCTAGGAATCACATTACAAAGGGGAAAAGGCAACAACAGC
ACCAGCAAATAAAGAACAGATCCTCAATTAGTGATGGTGATGGAGAAGATTCCTTTATTTTTGAAGCAAA
TGAAGCTTGGAAAGATTTTCATGGTTCTCTTCTTCGATTTTATGAAAATGGAGAACTCTGTGATGTCACA
CTCAAGGTTGGCTCAAAGCTAATCTCTTGTCACAAGCTGGTATTGGCTTGTGTTATTCCCTACTTTAGAG
CCATGTTTCTTTCTGAAATGGCTGAAGCCAAGCAAACGCTGATTGAGATTAGAGATTTTGATGGTGATGC
AATAGAAGACTTGGTAAAGTTTGTCTATTCTTCACGGCTCACTTTGACTGTTGACAATGTCCAGCCTCTC
TTATATGCAGCCTGTATTCTGCAGGTTGAACTGGTGGCTAGAGCTTGTTGTGAATACATGAAGTTACATT
TTCATCCCTCCAATTGCCTGGCAGTAAGAGCCTTTGCAGAAAGTCACAATCGAATAGACTTAATGGACAT
GGCGGATCAGTATGCCTGTGACCATTTTACTGAAGTAGTGGAGTGTGAAGACTTTGTAAGTGTATCACCG
CAGCACCTCCATAAGCTTTTGTCCTCCAGTGATCTAAATATTGAAAATGAAAAGCAGGTCTATAATGCTG
CCATCAAGTGGCTTCTTGCCAATCCTCAGCATCATTCCAAATGGTTGGATGAAACACTTGCACAGGTTCG
CCTGCCATTGTTGCCGGTTGATTTTCTTATGGGTGTTGTGGCAAAAGAACAGATTGTCAAGCAAAATCTA
AAATGTAGAGATTTACTGGATGAAGCAAGAAATTACCACCTTCACTTGAGTAGCAGAGCAGTACCTGACT
TTGAATACTCCATTCGGACTACCCCAAGGAAGCATACTGCTGGTGTGCTGTTTTGTGTAGGTGGTCGAGG
TGGATCTGGTGACCCCTTTCGCAGTATTGAATGCTATTCTATCAACAAAAACAGTTGGTTCTTTGGACCA
GAAATGAATAGTCGAAGGCGACATGTGGGTGTAATCTCTGTGGAAGGTAAAGTGTATGCAGTAGGTGGAC
ATGATGGAAATGAACATTTAGGGAGTATGGAGATGTTTGATCCTCTCACTAATAAATGGATGATGAAGGC
ATCAATGAACACAAAGAGGCGAGGAATTGCCTTGGCTTCCTTAGGAGGCCCAATTTATGCAATTGGAGGG
TTAGATGACAATACTTGCTTCAATGATGTGGAGAGATATGACATAGAATCTGATCAGTGGAGTACAGTGG
CACCAATGAATACTCCCCGTGGAGGAGTTGGCTCTGTTGCTCTAGTAAACCATGTTTATGCAGTAGGTGG
CAATGATGGAATGGCTTCTTTATCTAGCGTGGAGAGATATGATCCACATCTGGATAAGTGGATAGAAGTT
AAAGAAATGGGTCAGCGAAGAGCAGGCAATGGAGTTAGCAAGCTTCATGGTTGCTTATACGTAGTTGGTG
GTTTTGATGATAATTCTCCTCTGAGTTCAGTTGAGCGGTATGACCCCCGAAGCAACAAGTGGGATTATGT
GGCAGCACTTACTACTCCCAGAGGTGGAGTGGGAATCGCAACAGTGATGGGCAAAATCTTTGCAGTTGGT
GGTCATAATGGCAATGCATACTTAAATACAGTAGAAGCGTTTGATCCAGTGCTGAATAGGTGGGAGCTTG
TTGGATCTGTGTCTCACTGCAGAGCTGGAGCAGGAGTAGCTGTGTGTTCCTGTTTAACTAGCCAAATTCG
AGATGTAGGTCATGGATCCAATAATGTGGTTGACTGTATGTGA

Translation (620 aa):
MASDSMSSKQARNHITKGKRQQQHQQIKNRSSISDGDGEDSFIFEANEAWKDFHGSLLRFYENGELCDVT
LKVGSKLISCHKLVLACVIPYFRAMFLSEMAEAKQTLIEIRDFDGDAIEDLVKFVYSSRLTLTVDNVQPL
LYAACILQVELVARACCEYMKLHFHPSNCLAVRAFAESHNRIDLMDMADQYACDHFTEVVECEDFVSVSP
QHLHKLLSSSDLNIENEKQVYNAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNL
KCRDLLDEARNYHLHLSSRAVPDFEYSIRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGP
EMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGG
LDDNTCFNDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGMASLSSVERYDPHLDKWIEV
KEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVG
GHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQIRDVGHGSNNVVDCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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