NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36151.1 Public Mus musculus 11 Uqcrq 23 108 98 CCDS HistoryNCBI Gene:22272Re-query CCDS DB by CCDS ID:36151.1Re-query CCDS DB by GeneID:22272See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061326.4 ENSMUSP00000053145.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061326.4Link to Ensembl Protein Viewer:ENSMUSP00000053145.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061326Re-query CCDS DB by Protein ID:ENSMUSP00000053145
Original member Current member EBI ENSMUST00000109021.3 ENSMUSP00000104649.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109021.3Link to Ensembl Protein Viewer:ENSMUSP00000104649.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109021Re-query CCDS DB by Protein ID:ENSMUSP00000104649
Original member Current member NCBI NM_001326614.1 NP_001313543.1 Accepted alive Link to Nucleotide Sequence:NM_001326614.1Link to Protein Sequence:NP_001313543.1Re-query CCDS DB by Nucleotide ID:NM_001326614Re-query CCDS DB by Protein ID:NP_001313543Link to BLAST:NP_001313543.1
Original member Current member NCBI NM_025352.3 NP_079628.1 Accepted alive Link to Nucleotide Sequence:NM_025352.3Link to Protein Sequence:NP_079628.1Re-query CCDS DB by Nucleotide ID:NM_025352Re-query CCDS DB by Protein ID:NP_079628Link to BLAST:NP_079628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313543.1 82 Q9CQ69 82 100% 0 0
NP_079628.1 82 Q9CQ69 82 100% 0 0

Chromosomal Locations for CCDS 36151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53429056 53429150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53430536 53430689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGGGCCGCGAGTTTGGGAACCTGGCGCGGATACGGCACGTGATCTCCTACAGCTTGTCGCCCTTTGAGC
AGCGCGCCTTCCCAAGCTATTTCAGCAAAGGCATCCCCAACGTGCTGCGCCGCACTCGCGAGCGCATCCT
GCGCGTGGCGCCGCCGTTTGTAGTGGTCTACCTGATCTACACATGGGGCAACCAGGAGTTTGAGCAGTCG
AAAAGGAAGAATCCAGCCATGTATGAAAATGACAAGTAG

Translation (82 aa):
MGREFGNLARIRHVISYSLSPFEQRAFPSYFSKGIPNVLRRTRERILRVAPPFVVVYLIYTWGNQEFEQS
KRKNPAMYENDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH