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Report for CCDS36105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36105.1 Public Mus musculus 11 Urgcp 23 108 98 CCDS HistoryNCBI Gene:72046Re-query CCDS DB by CCDS ID:36105.1Re-query CCDS DB by GeneID:72046See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053427.10 ENSMUSP00000055821.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053427.10Link to Ensembl Protein Viewer:ENSMUSP00000055821.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053427Re-query CCDS DB by Protein ID:ENSMUSP00000055821
Original member Current member EBI ENSMUST00000120306.7 ENSMUSP00000113060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120306.7Link to Ensembl Protein Viewer:ENSMUSP00000113060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120306Re-query CCDS DB by Protein ID:ENSMUSP00000113060
Original member Current member EBI ENSMUST00000118076.7 ENSMUSP00000113589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118076.7Link to Ensembl Protein Viewer:ENSMUSP00000113589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118076Re-query CCDS DB by Protein ID:ENSMUSP00000113589
Original member Current member EBI ENSMUST00000170116.7 ENSMUSP00000133216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170116.7Link to Ensembl Protein Viewer:ENSMUSP00000133216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170116Re-query CCDS DB by Protein ID:ENSMUSP00000133216
Original member Current member NCBI NM_001077661.1 NP_001071129.1 Accepted alive Link to Nucleotide Sequence:NM_001077661.1Link to Protein Sequence:NP_001071129.1Re-query CCDS DB by Nucleotide ID:NM_001077661Re-query CCDS DB by Protein ID:NP_001071129Link to BLAST:NP_001071129.1
Original member Current member NCBI NM_001361588.1 NP_001348517.1 Accepted alive Link to Nucleotide Sequence:NM_001361588.1Link to Protein Sequence:NP_001348517.1Re-query CCDS DB by Nucleotide ID:NM_001361588Re-query CCDS DB by Protein ID:NP_001348517Link to BLAST:NP_001348517.1
Original member Current member NCBI NM_001361589.1 NP_001348518.1 Accepted alive Link to Nucleotide Sequence:NM_001361589.1Link to Protein Sequence:NP_001348518.1Re-query CCDS DB by Nucleotide ID:NM_001361589Re-query CCDS DB by Protein ID:NP_001348518Link to BLAST:NP_001348518.1
Original member Current member NCBI NM_001361590.1 NP_001348519.1 Accepted alive Link to Nucleotide Sequence:NM_001361590.1Link to Protein Sequence:NP_001348519.1Re-query CCDS DB by Nucleotide ID:NM_001361590Re-query CCDS DB by Protein ID:NP_001348519Link to BLAST:NP_001348519.1
Original member Current member NCBI NM_001361591.1 NP_001348520.1 Accepted alive Link to Nucleotide Sequence:NM_001361591.1Link to Protein Sequence:NP_001348520.1Re-query CCDS DB by Nucleotide ID:NM_001361591Re-query CCDS DB by Protein ID:NP_001348520Link to BLAST:NP_001348520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071129.1 883 Q5NCI0-2 883 100% 0 0
NP_001348517.1 883 Q5NCI0-2 883 100% 0 0
NP_001348518.1 883 Q5NCI0-2 883 100% 0 0
NP_001348519.1 883 Q5NCI0-2 883 100% 0 0
NP_001348520.1 883 Q5NCI0-2 883 100% 0 0

Chromosomal Locations for CCDS 36105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5715685 5718263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5722802 5722840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5723111 5723144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGGAAGGAGATGACTGCGGGTTCCATTATGGAGATGGTACAAACGAGGCTCAGGACAATGACTTCCCCA
CAGTGGAGAGAAGCAGGCTTCAGGAGATGCTGTCCCTGTTGGGACTGGAGACATACCAGGCACAGAAGCT
CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAGCATGAAGAACTGGGCTCCTCAGGTTCCCAAGGAC
CTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTGG
ACGTGCCTCCAGAGGCCTGGCCTGCAGAGAAGGAGAGCCAGGCAGAGGAGGAGATGATGTACTGGGACCC
AGCGGAGGACGTCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCC
CTGGATCTTCTCTGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAAGATGT
CCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTACCACACCTTTCTGCTCTG
GGCCCTGCGGGGTGTTGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCTGGGGAGTTTCCGAGAAGAC
AGTGTGGTCCTGTCCAGGGTGCCCACGTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCC
AGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT
AGGCACTAATCCTCGCGAGATCTCGGATGGGTTAGTAGAGATCTCCTGGTTTTTCCCCAGTGGTAAGGAG
GACCTGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTCACTGGCTGC
AGTTCAAGCTCTTGACAGAAGTCTCCTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATA
CAAACTGCTGTACTCCATGAAGGAGTCAACCACAAAGTACTACTTCATCCTGAGTCCCTACCGAGGGAAA
CGGAACACGAACCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGG
TGAAGGTCAGCAGCACGGACAGCGAGGGCTTCGTGAGGCGCATCCGAGCCATCATGTGCAGTGTGGCTCG
CTCTCCCTGCAGGAGGGTGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGAT
GAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGAAAATCCTCAGGAAGATCAAGGATGTGG
ACGCCTACAAGAGAGACGAGCTGCGGCTGCAGGGCGAGCCTGCGAGGAGGGCCGCCCAAGCTGAAAGAGA
GTTCTGCCAGCTCCAGTGGGTCCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAGACGGCGCGTCCTT
GAGCTCCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGGAATAAGCA
GCCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATGGATGGAGTGGGGCTTGGCTCGGCTTGGCCAGCC
ACGGCCAAGACAGCCTCCAGAGACCCTTCTCACCCTCAGACCAAAACTTGGTGGGCCCTCAGACTTGACG
GAGCCACTCTGGCCTGAGCCCTTGGGAGTGGAGCACTTCCTACGGGAGATGGGCCAGTTCTATGAAGCGG
AGAGCTGCCTGATCGAGGCAGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGC
TGTGGAACTGCTGCTGGGTGGGCTGCCCCTGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTGTTCGA
TGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCGCCTAGACAGGAGATCTCGGCTAGTGGTTCTCTCTG
CCCTGGGGGTGCCTGGCACAGGGAAATCTACACTCCTTAACACCATGTTTGGCCTGAAATTTGCCACTGG
GAGGAGCTGTAGTCCCCGGGGGGCCTTCATGCAGCTCCTCCCTGTAGCTGAGGGCTTCAGTCAGGACCTG
GGCTGTGACCAGATCCTGGTAATAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCTCTGCTGGAGACA
GGTTTGAACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGCTAAGTAATGTCACTGTGGTCAGTTTAGC
TGAAACAAAGGACATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCTAGAAAAAATGGGGCACATGCCC
AACTATCAGTTTGTGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGC
AGCTCCTGGATCCGCCAAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGAC
ACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATG
GCCGCTGTGAGCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGAGATGCCTATTAGAAAACATCAGGA
ATGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCAGGCTGTGA

Translation (883 aa):
MEGDDCGFHYGDGTNEAQDNDFPTVERSRLQEMLSLLGLETYQAQKLTLQDSLQISFDSMKNWAPQVPKD
LPWHFLRKLQALNAEARNTTMVLDVPPEAWPAEKESQAEEEMMYWDPAEDVAADIYSFSELPMPDTPVNP
LDLLCALLLSSDTFLQQEVLLKMSLCQFALPLVLPDSENHYHTFLLWALRGVVRTWWFQPLRSLGSFRED
SVVLSRVPTFAFVRMDVSSNSKSQLLNAVLSPARRQWDCFWHRDLNLGTNPREISDGLVEISWFFPSGKE
DLDVFPEPMAFLNLRGDIGSHWLQFKLLTEVSSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGK
RNTNLRFLNRLIPVLKIDHSHVLVKVSSTDSEGFVRRIRAIMCSVARSPCRRVSVEDMAHAARKLGLRVD
EDFEECQKAKDRMEKILRKIKDVDAYKRDELRLQGEPARRAAQAEREFCQLQWVPEPPEKHRAELRRRVL
ELRVQQNGQEPTSGVQEFILGISSPSPSERQYFLRWMEWGLARLGQPRPRQPPETLLTLRPKLGGPSDLT
EPLWPEPLGVEHFLREMGQFYEAESCLIEAGRLPAGQRRFAHFPGVAVELLLGGLPLELVDGATLSIPVR
WVTGLLKELHTRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLKFATGRSCSPRGAFMQLLPVAEGFSQDL
GCDQILVIDSGGLISGALASAGDRFELEASLATLLMGLSNVTVVSLAETKDIPPAVLHAFLRLEKMGHMP
NYQFVYQNLHDLPVPSPKPRDRRQLLDPPSDLSRATHLEKQGGGFRTLAGLAERQHVWHIPALWHGAPPM
AAVSLGYSEAIFELKRCLLENIRNGLSNQNQNIQQLIELLRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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