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Report for CCDS36079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36079.1 Public Mus musculus 10 Arhgap9 23 108 98 CCDS HistoryNCBI Gene:216445Re-query CCDS DB by CCDS ID:36079.1Re-query CCDS DB by GeneID:216445See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069548.6 ENSMUSP00000066455.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069548.6Link to Ensembl Protein Viewer:ENSMUSP00000066455.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069548Re-query CCDS DB by Protein ID:ENSMUSP00000066455
Original member Current member EBI ENSMUST00000219026.1 ENSMUSP00000151574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219026.1Link to Ensembl Protein Viewer:ENSMUSP00000151574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219026Re-query CCDS DB by Protein ID:ENSMUSP00000151574
Original member Current member NCBI NM_001359656.1 NP_001346585.1 Accepted alive Link to Nucleotide Sequence:NM_001359656.1Link to Protein Sequence:NP_001346585.1Re-query CCDS DB by Nucleotide ID:NM_001359656Re-query CCDS DB by Protein ID:NP_001346585Link to BLAST:NP_001346585.1
Original member Current member NCBI NM_146011.3 NP_666123.2 Accepted alive Link to Nucleotide Sequence:NM_146011.3Link to Protein Sequence:NP_666123.2Re-query CCDS DB by Nucleotide ID:NM_146011Re-query CCDS DB by Protein ID:NP_666123Link to BLAST:NP_666123.2

Chromosomal Locations for CCDS 36079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127325131 127325199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127325523 127325630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127325844 127325902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326048 127326141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326332 127326427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326553 127326651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127326873 127327014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327095 127327205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327638 127327736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127327899 127327976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328094 127328147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328390 127328524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127328878 127328983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127329499 127329670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGAGCAGACAGAGACTTTGACTAGGGACAGCAGTGCCCTACAGCCTCAGGAATGGCTCGATCCACAGG
GTTTACCAAGCCTCAGCCAAAGCGTCCCATGGCTTGCTCTCTCTGAACAGCCGGGAGCCTTGAGGCCCTG
TTCAGCTCTGCCACAGCTCCTGGATGACCCCCACGTGGAAGAAAGGTCAGGCCTGCTCAACATGACCAAG
ATTGCTCAAGGAGGGCGCAAACTCAGGAAGAACTGGGGCCCTGCTTGGGTGGTGTTAACTGGTAGCAGCC
TTGTGTTTTACCGAGAGCGGCCACCGCAGTCTGCATCCCTCCAAGGCTGGGCGCGGGCTGGGAGCCGGCC
GGAGAGTAGCGTGGACCTGCGCGGGGCGGCCCTGGCCAGCGGGCGCCAGCTGTCCAGCCGCCGGAACGTC
CTGCACATCCGCACGGTCCCGGGACATGAGTTCCTGCTGCAGTCGGACGAGGAGACCGAGCTGCGAGACT
GGCACCGCGCGCTGCGGACTGTCATCGAGCGGCTGGATCGGGAGAACCCCCTGGAGCTGCGTCTGTCGGG
CTCCGGACCCGCCGAGCTGGCCGAGCTGAGCGCTGGTGAGGATGACGAATTGGAATCGGAACCGGTGTCC
AAGTCCCTGATGCGGCTTGGCAGCCGCAGAACTTCCAGTCGGTGTGCAGAGGGCACTGACCAGAAGAACC
GCGTGCGGAACAAGTTAAAGCGGCTAATCGCCAAGAGACCAACCTTGCAGAGCCTACAAGAGCGGGGTCT
GTTCCGAGACCAGGTTTTTGGCTGCCAGTTGGAGTCGCTGTGCCAACGGGAAGGGGACACCGTGCCCAGC
TTTGTCCGGCTTTGTGTTGAGGCCGTGGATAAAAAAGGTCTAGACGTGGATGGTATTTACCGGGTGAGTG
GGAACCTGGCCGTGGTCCAGAAACTCCGCTTCCTGGTAGACAGAGAACGGGCAGTGACCTCTGATGGGAG
ATACATGTTCCCAGAACAGGCAGGACAAGAAGGCAAATTAGATTTAGACAGTGCCGAATGGGATGATATT
CACGTGGTCACCGGAGCTTTGAAGCTTTTTTTCCGGGAGCTGCCACAGCCTCTGGTGCCTGCATTGTTGC
TGCCTGACTTTCGTGATGCCCTTGAACTTTCTGAGCCAGAGCAGTGCCTCTCCAAAATCCAGAAATTAAT
AGACTCGCTGCCGAGGCCCAACCATGACACTCTGAAGTACATCCTGGAGCATCTGTGCAGGGTGATAGCA
CACTCGGATAAGAACCGAATGACCGCCCACAACCTGGGAATTGTGTTTGGACCGACACTGTTTCGACCTG
AGCAGGAGGCCTCTGACATGGCGGCCCACGTATTCTACCCCGGGCAGCTGGTCCAGTTGATGCTCAACAA
CTTTGCCAGCCTCTTCACTTGA

Translation (473 aa):
MEQTETLTRDSSALQPQEWLDPQGLPSLSQSVPWLALSEQPGALRPCSALPQLLDDPHVEERSGLLNMTK
IAQGGRKLRKNWGPAWVVLTGSSLVFYRERPPQSASLQGWARAGSRPESSVDLRGAALASGRQLSSRRNV
LHIRTVPGHEFLLQSDEETELRDWHRALRTVIERLDRENPLELRLSGSGPAELAELSAGEDDELESEPVS
KSLMRLGSRRTSSRCAEGTDQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPS
FVRLCVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQAGQEGKLDLDSAEWDDI
HVVTGALKLFFRELPQPLVPALLLPDFRDALELSEPEQCLSKIQKLIDSLPRPNHDTLKYILEHLCRVIA
HSDKNRMTAHNLGIVFGPTLFRPEQEASDMAAHVFYPGQLVQLMLNNFASLFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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