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Report for CCDS35914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35914.1 Public Mus musculus 10 Sgpl1 23 108 98 CCDS HistoryNCBI Gene:20397Re-query CCDS DB by CCDS ID:35914.1Re-query CCDS DB by GeneID:20397See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092498.11 ENSMUSP00000090155.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092498.11Link to Ensembl Protein Viewer:ENSMUSP00000090155.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092498Re-query CCDS DB by Protein ID:ENSMUSP00000090155
Original member Current member EBI ENSMUST00000122259.7 ENSMUSP00000112975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122259.7Link to Ensembl Protein Viewer:ENSMUSP00000112975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122259Re-query CCDS DB by Protein ID:ENSMUSP00000112975
Original member Current member NCBI NM_001316673.1 NP_001303602.1 Accepted alive Link to Nucleotide Sequence:NM_001316673.1Link to Protein Sequence:NP_001303602.1Re-query CCDS DB by Nucleotide ID:NM_001316673Re-query CCDS DB by Protein ID:NP_001303602Link to BLAST:NP_001303602.1
Original member Current member NCBI NM_001316674.1 NP_001303603.1 Accepted alive Link to Nucleotide Sequence:NM_001316674.1Link to Protein Sequence:NP_001303603.1Re-query CCDS DB by Nucleotide ID:NM_001316674Re-query CCDS DB by Protein ID:NP_001303603Link to BLAST:NP_001303603.1
Original member Current member NCBI NM_009163.4 NP_033189.2 Accepted alive Link to Nucleotide Sequence:NM_009163.4Link to Protein Sequence:NP_033189.2Re-query CCDS DB by Nucleotide ID:NM_009163Re-query CCDS DB by Protein ID:NP_033189Link to BLAST:NP_033189.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303602.1 568 Q8R0X7 568 100% 0 0
NP_001303603.1 568 Q8R0X7 568 100% 0 0
NP_033189.2 568 Q8R0X7 568 100% 0 0

Chromosomal Locations for CCDS 35914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61100868 61101008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61101681 61101801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61102568 61102714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61103121 61103359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61104463 61104612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61105422 61105520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61106265 61106370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61107577 61107665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61112162 61112290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61113438 61113514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61114010 61114157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61117695 61117762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61123309 61123474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61146258 61146284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCCCGGAACCGACCTCCTCAAGCTGAAGGACTTCGAGCCTTATTTGGAGATTTTGGAATCATATTCCA
CAAAAGCCAAGAATTATGTGAATGGATATTGCACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAGTGT
CCTGTGTACTCTGCTGATAGTCTGGGTGTATGAGCTTATCTTCCAGCCAGAGAGTTTATGGTCTCGGTTT
AAAAAAAAATTATTTAAGCTTATCAGGAAGATGCCATTTATTGGACGTAAGATCGAACAACAGGTGAGCA
AAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTAAAGGTGGACAAGGATTATGTGAAAACTCTGCC
TGCTCAGGGTATGGGCACAGCTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGGTTCCTGG
CAAGAAGGGAAAGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCTCACGGAGCTGCTGGTGCAGGCTT
ATGGAGAATTCACGTGGAGCAATCCACTGCATCCAGATATCTTCCCTGGATTGCGGAAGTTAGAGGCAGA
AATCGTTAGGATGACTTGTTCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGTGTGACTTCTGGGGGA
ACGGAAAGCATCCTGATGGCCTGCAAAGCTTACCGGGACTTGGCGTTAGAGAAGGGGATCAAAACTCCAG
AAATTGTGGCTCCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCTCATTATTTTGGGATGAAGATTGT
CCGAGTTGCACTGAAAAAGAACATGGAGGTGGATGTGCAGGCAATGAAGAGAGCCATCTCCAGGAACACA
GCTATGCTGGTCTGTTCTACCCCACAGTTTCCTCATGGTGTGATGGATCCTGTCCCCGAAGTGGCCAAGT
TGGCTGTCAGATATAAAATCCCACTCCATGTGGATGCTTGTCTGGGGGGCTTCCTCATTGTCTTCATGGA
GAAAGCAGGGTACCCACTGGAGAAACCATTTGATTTCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGAT
ACTCATAAGTATGGCTATGCTCCTAAAGGTTCATCAGTGGTGATGTACTCTAACGAGAAGTACAGGACGT
ACCAGTTCTTTGTTGGTGCAGACTGGCAAGGTGGTGTCTACGCATCTCCAAGCATAGCTGGCTCACGGCC
TGGTGGCATCATTGCAGCCTGTTGGGCCGCCTTGATGCACTTCGGTGAGAACGGCTATGTTGAAGCTACC
AAACAGATCATCAAAACTGCTCGCTTCCTGAAGTCAGAACTGGAAAACATCAAAAACATCTTCATTTTCG
GTGATCCTCAATTGTCAGTTATTGCTCTGGGATCCAACGATTTTGACATTTACCGACTATCTAATATGAT
GTCTGCTAAGGGGTGGAATTTTAACTACCTGCAGTTCCCAAGAAGCATTCATTTCTGCATTACGTTAGTA
CATACTCGGAAGCGAGTGGCGATCCAGTTCCTAAAGGATATCCGGGAATCAGTCACACAAATCATGAAGA
ATCCTAAAGCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCT
GGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTTTATACTACGGACCCCGTGACTCAGGGCAACCAG
ATGAACGGTTCTCCAAAGCCCCGCTGA

Translation (568 aa):
MPGTDLLKLKDFEPYLEILESYSTKAKNYVNGYCTKYEPWQLIAWSVLCTLLIVWVYELIFQPESLWSRF
KKKLFKLIRKMPFIGRKIEQQVSKAKKDLVKNMPFLKVDKDYVKTLPAQGMGTAEVLERLKEYSSMDGSW
QEGKASGAVYNGEPKLTELLVQAYGEFTWSNPLHPDIFPGLRKLEAEIVRMTCSLFNGGPDSCGCVTSGG
TESILMACKAYRDLALEKGIKTPEIVAPESAHAAFDKAAHYFGMKIVRVALKKNMEVDVQAMKRAISRNT
AMLVCSTPQFPHGVMDPVPEVAKLAVRYKIPLHVDACLGGFLIVFMEKAGYPLEKPFDFRVKGVTSISAD
THKYGYAPKGSSVVMYSNEKYRTYQFFVGADWQGGVYASPSIAGSRPGGIIAACWAALMHFGENGYVEAT
KQIIKTARFLKSELENIKNIFIFGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFNYLQFPRSIHFCITLV
HTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDRKLVAEISSVFLDCLYTTDPVTQGNQ
MNGSPKPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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