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Report for CCDS3565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3565.1 Public Homo sapiens 4 AREG 24 110 108 CCDS HistoryNCBI Gene:374Re-query CCDS DB by CCDS ID:3565.1Re-query CCDS DB by GeneID:374See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395748.8 ENSP00000379097.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395748.8Link to Ensembl Protein Viewer:ENSP00000379097.3Re-query CCDS DB by Nucleotide ID:ENST00000395748Re-query CCDS DB by Protein ID:ENSP00000379097
Original member Current member NCBI NM_001657.4 NP_001648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001657.4Link to Protein Sequence:NP_001648.1Re-query CCDS DB by Nucleotide ID:NM_001657Re-query CCDS DB by Protein ID:NP_001648Link to BLAST:NP_001648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001648.1 252 P15514 252 100% 0 0

Chromosomal Locations for CCDS 3565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 74445346 74445406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74446534 74446782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74449047 74449248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74450380 74450532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 74452544 74452637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGAGAGCCCCGCTGCTACCGCCGGCGCCGGTGGTGCTGTCGCTCTTGATACTCGGCTCAGGCCATTATG
CT
GCTGGATTGGACCTCAATGACACCTACTCTGGGAAGCGTGAACCATTTTCTGGGGACCACAGTGCTGA
T
GGATTTGAGGTTACCTCAAGAAGTGAGATGTCTTCAGGGAGTGAGATTTCCCCTGTGAGTGAAATGCCT
TCT
AGTAGTGAACCGTCCTCGGGAGCCGACTATGACTACTCAGAAGAGTATGATAACGAACCACAAATAC
CT
GGCTATATTGTCGATGATTCAGTCAGAGTTGAACAGGTAGTTAAGCCCCCCCAAAACAAGACGGAAAG
T
GAAAATACTTCAGATAAACCCAAAAGAAAGAAAAAGGGAGGCAAAAATGGAAAAAATAGAAGAAACAGA
AAG
AAGAAAAATCCATGTAATGCAGAATTTCAAAATTTCTGCATTCACGGAGAATGCAAATATATAGAGC
AC
CTGGAAGCAGTAACATGCAAATGTCAGCAAGAATATTTCGGTGAACGGTGTGGGGAAAAGTCCATGAA
A
ACTCACAGCATGATTGACAGTAGTTTATCAAAAATTGCATTAGCAGCCATAGCTGCCTTTATGTCTGCT
GTG
ATCCTCACAGCTGTTGCTGTTATTACAGTCCAGCTTAGAAGACAATACGTCAGGAAATATGAAGGAG
AA
GCTGAGGAACGAAAGAAACTTCGACAAGAGAATGGAAATGTACATGCTATAGCATAA


Translation (252 aa):
MRAPLLPPAPVVLSLLILGSGHYAAGLDLNDTYSGKREPFSGDHSADGFEVTSRSEMSSGSEISPVSEMP
S
SSEPSSGADYDYSEEYDNEPQIPGYIVDDSVR
VEQVVKPPQNKTESENTSDKPKRKKKGGKNGKNRRNR
K
KKNPCNAEFQNFCIHGECKYIEHLEAVTC
KCQQEYFGERCGEKSMKTHSMIDSSLSKIALAAIAAFMSA
V
ILTAVAVITV
QLRRQYVRKYEGEAEERKKLRQENGNVHAIA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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