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Report for CCDS35614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35614.1 Public Mus musculus 1 Pnkd 23 108 98 CCDS HistoryNCBI Gene:56695Re-query CCDS DB by CCDS ID:35614.1Re-query CCDS DB by GeneID:56695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113805.7 ENSMUSP00000109436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113805.7Link to Ensembl Protein Viewer:ENSMUSP00000109436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113805Re-query CCDS DB by Protein ID:ENSMUSP00000109436
Original member Current member NCBI NM_025580.2 NP_079856.2 Accepted alive Link to Nucleotide Sequence:NM_025580.2Link to Protein Sequence:NP_079856.2Re-query CCDS DB by Nucleotide ID:NM_025580Re-query CCDS DB by Protein ID:NP_079856Link to BLAST:NP_079856.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079856.2 142 Q69ZP3-2 142 99.2958% 0 1

Chromosomal Locations for CCDS 35614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74285071 74285137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74285842 74286010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74287092 74287284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGCGTCCTCCGGGGGA
TCCTCTCTGGAGCCACAGCTAACAAGGCTTCCCAGAACAGGACCAGAGCACTGCAGAGCCACAGCTCACC
AGAATGCAAGGAGGAGCCCGAGCCCCTCTCCCCTGAGCTAGAATACATTCCCAGAAAGAGGGGCAAGAAC
CCCATGAAAGCCGTGGGGCTAGCCTGGGCCATCGGCTTCCCCTGTGGTATCCTCTTCTTCGTCCTCACCA
AGCAGGAAGTGGACAAGGACCGATTGAAGCAGATGAAAGCTCGTCAGAACATGCGGGTGTCCAACACGGG
CGAGTATGAGAGCCAGAGGTTCAGGGCTTCACCCCAACAAGCCCAGTTCCCTGAGGTTGGGTCTGGGGCC
CAGACCTGA

Translation (142 aa):
MAAVVAATALKGRGARNARVLRGILSGATANKASQNRTRALQSHSSPECKEEPEPLSPELEYIPRKRGKN
PMKAVGLAWAIGFPCGILFFVLTKQEVDKDRLKQMKARQNMRVSNTGEYESQRFRASPQQAQFPEVGSGA
QT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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