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Report for CCDS35612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35612.1 Public Mus musculus 1 Arpc2 23 108 98 CCDS HistoryNCBI Gene:76709Re-query CCDS DB by CCDS ID:35612.1Re-query CCDS DB by GeneID:76709See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006467.13 ENSMUSP00000006467.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006467.13Link to Ensembl Protein Viewer:ENSMUSP00000006467.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006467Re-query CCDS DB by Protein ID:ENSMUSP00000006467
Original member Current member EBI ENSMUST00000113820.8 ENSMUSP00000109451.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113820.8Link to Ensembl Protein Viewer:ENSMUSP00000109451.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113820Re-query CCDS DB by Protein ID:ENSMUSP00000109451
Original member NCBI NM_001357387.1 NP_001344316.1 Updated not alive Link to Nucleotide Sequence:NM_001357387.1Link to Protein Sequence:NP_001344316.1Re-query CCDS DB by Nucleotide ID:NM_001357387Re-query CCDS DB by Protein ID:NP_001344316
Current member NCBI NM_001357387.2 NP_001344316.1 Accepted alive Link to Nucleotide Sequence:NM_001357387.2Link to Protein Sequence:NP_001344316.1Re-query CCDS DB by Nucleotide ID:NM_001357387Re-query CCDS DB by Protein ID:NP_001344316Link to BLAST:NP_001344316.1
Original member NCBI NM_029711.2 NP_083987.1 Updated not alive Link to Nucleotide Sequence:NM_029711.2Link to Protein Sequence:NP_083987.1Re-query CCDS DB by Nucleotide ID:NM_029711Re-query CCDS DB by Protein ID:NP_083987
Current member NCBI NM_029711.3 NP_083987.1 Accepted alive Link to Nucleotide Sequence:NM_029711.3Link to Protein Sequence:NP_083987.1Re-query CCDS DB by Nucleotide ID:NM_029711Re-query CCDS DB by Protein ID:NP_083987Link to BLAST:NP_083987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344316.1 300 Q9CVB6 300 100% 0 0
NP_083987.1 300 Q9CVB6 300 100% 0 0

Chromosomal Locations for CCDS 35612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74236826 74236899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74246080 74246114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74248132 74248244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74251254 74251299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74254828 74255014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74255958 74256051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74262459 74262585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74263743 74263843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74264353 74264453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74267771 74267795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGATCCTGCTGGAGGTGAACAACCGCATCATCGAGGAGACGCTCGCGCTCAAGTTCGAGAACGCGGCCG
CCGGAAACAAACCAGAAGCTGTAGAAGTAACATTTGCAGATTTTGATGGCGTCCTTTATCATATTTCAAA
TCCTAATGGAGACAAAACAAAAGTGATGGTCAGTATTTCTTTGAAATTCTACAAGGAACTTCAGGCACAT
GGAGCTGATGAGTTGTTAAAGAGAGTGTATGGGAGCTTCTTGGTAAATCCAGAACCAGGATATAATGTTT
CTTTGCTATATGACCTGGAAAATCTACCTGCATCCAAGGATTCTATTGTGCATCAGGCTGGCATGTTGAA
GCGAAATTGTTTTGCCTCTGTGTTTGAGAAATACTTCCAATTCCAAGAAGAGGGCAAAGAAGGAGAGAAC
AGAGCAGTTATCCATTATAGGGATGATGAGACCATGTATGTGGAATCTAAGAAAGACAGAGTCACAGTAG
TCTTCAGCACGGTTTTTAAAGATGACGACGATGTGGTCATCGGAAAGGTGTTCATGCAGGAGTTCAAAGA
AGGACGAAGAGCCAGCCACACAGCCCCCCAGGTCCTTTTCAGCCACAGGGAACCTCCTCTAGAGCTGAAA
GACACAGATGCTGCTGTGGGTGACAACATTGGCTACATCACCTTTGTGCTGTTCCCTCGCCACACCAATG
CCACTGCTCGAGACAACACCATCAACCTGATCCACACGTTCCGGGACTATCTGCACTACCACATTAAGTG
CTCTAAGGCCTATATTCATACACGAATGCGAGCAAAAACATCCGACTTCCTTAAGGTGCTCAACCGTGCA
CGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCACGGGGAAGACTTTTTCATCCCGCTAA

Translation (300 aa):
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAH
GADELLKRVYGSFLVNPEPGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGEN
RAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELK
DTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRA
RPDAEKKEMKTITGKTFSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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