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Report for CCDS35476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35476.1 Public Homo sapiens Y HSFY2 24 110 108 CCDS HistoryNCBI Gene:159119Re-query CCDS DB by CCDS ID:35476.1Re-query CCDS DB by GeneID:159119See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344884.4 ENSP00000340971.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344884.4Link to Ensembl Protein Viewer:ENSP00000340971.4Re-query CCDS DB by Nucleotide ID:ENST00000344884Re-query CCDS DB by Protein ID:ENSP00000340971
Original member Current member NCBI NM_001001877.2 NP_001001877.1 Accepted alive Link to Nucleotide Sequence:NM_001001877.2Link to Protein Sequence:NP_001001877.1Re-query CCDS DB by Nucleotide ID:NM_001001877Re-query CCDS DB by Protein ID:NP_001001877Link to BLAST:NP_001001877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001877.1 203 Q96LI6-2 203 100% 0 0

Chromosomal Locations for CCDS 35476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 18731769 18731867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 18773106 18773618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCA
CTAGGTCTCCATTGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGC
TTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTCTGAGCCAGAT
AAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCA
AGTCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTT
GGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTT
TATGGATTTAGTAAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGA
AAGAATCGTCTGTCTTAAGCAAGATACGCTTCACCAAAATGAAACTTTCCAGATCTTCAACTTATGAAAA
CAGGTATTTATGTTGCAACTTACATTTAAAAGATGAGTCGAATTACTCATAA

Translation (203 aa):
MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESPSYTVCVSEPD
KDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETKAPYRIFQTDAIKSFVRQLNL
YGFSKIQQNFQRSAFLATFLSEEKESSVLSKIRFTKMKLSRSSTYENRYLCCNLHLKDESNYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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