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Report for CCDS35340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35340.1 Public Homo sapiens X TAF9B 24 110 108 CCDS HistoryNCBI Gene:51616Re-query CCDS DB by CCDS ID:35340.1Re-query CCDS DB by GeneID:51616See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341864.6 ENSP00000339917.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341864.6Link to Ensembl Protein Viewer:ENSP00000339917.5Re-query CCDS DB by Nucleotide ID:ENST00000341864Re-query CCDS DB by Protein ID:ENSP00000339917
Original member Current member NCBI NM_015975.5 NP_057059.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015975.5Link to Protein Sequence:NP_057059.2Re-query CCDS DB by Nucleotide ID:NM_015975Re-query CCDS DB by Protein ID:NP_057059Link to BLAST:NP_057059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057059.2 251 Q9HBM6 251 100% 0 0

Chromosomal Locations for CCDS 35340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78131610 78131773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78133338 78133448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78136915 78136990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78137749 78137883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78137962 78138098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78138843 78138924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78139561 78139611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGAGTCGGGCAAGATGGCGCCTCCCAAGAACGCTCCGAGAGATGCCTTGGTGATGGCACAGATCCTGA
AGGATATGGGAATCACAGAGTATGAACCAAGGGTTATAAATCAAATGTTGGAATTTGCTTTCCGTTATGT
GACTACAATTCTGGATGATGCAAAAATTTATTCGAGCCATGCTAAGAAACCTAATGTTGATGCAGATGAT
GTGAGACTGGCAATCCAGTGTCGTGCTGACCAATCTTTTACCTCTCCTCCCCCAAGAGATTTTTTACTGG
ATATCGCAAGGCAGAAAAATCAAACCCCTTTGCCACTGATTAAGCCATATGCAGGACCTAGACTGCCACC
TGATAGATACTGCTTAACAGCTCCAAACTATAGGCTGAAGTCCTTAATTAAAAAGGGACCTAACCAAGGG
AGACTAGTTCCACGATTAAGTGTTGGTGCTGTTAGTAGCAAACCTACTACTCCTACTATAGCAACCCCAC
AAACGGTGTCTGTCCCAAATAAAGTTGCAACTCCAATGTCAGTGACAAGCCAAAGATTTACGGTGCAGAT
TCCACCTTCTCAGTCCACACCTGTCAAACCAGTTCCTGCAACAACTGCAGTTCAAAATGTTCTGATTAAT
CCTTCAATGATTGGGCCCAAAAATATTCTTATTACCACCAACATGGTTTCGTCACAGAACACAGCCAATG
AAGCAAACCCACTGAAGAGAAAACATGAAGATGATGATGACAATGATATTATGTAA

Translation (251 aa):
MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADD
VRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQG
RLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLIN
PSMIGPKNILITTNMVSSQNTANEANPLKRKHEDDDDNDIM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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