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Report for CCDS35316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35316.1 Public Homo sapiens X PJA1 24 110 108 CCDS HistoryNCBI Gene:64219Re-query CCDS DB by CCDS ID:35316.1Re-query CCDS DB by GeneID:64219See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374571.5 ENSP00000363699.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374571.5Link to Ensembl Protein Viewer:ENSP00000363699.3Re-query CCDS DB by Nucleotide ID:ENST00000374571Re-query CCDS DB by Protein ID:ENSP00000363699
Original member Current member NCBI NM_001032396.4 NP_001027568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001032396.4Link to Protein Sequence:NP_001027568.1Re-query CCDS DB by Nucleotide ID:NM_001032396Re-query CCDS DB by Protein ID:NP_001027568Link to BLAST:NP_001027568.1
Original member Current member NCBI NM_001382776.1 NP_001369705.1 Accepted alive Link to Nucleotide Sequence:NM_001382776.1Link to Protein Sequence:NP_001369705.1Re-query CCDS DB by Nucleotide ID:NM_001382776Re-query CCDS DB by Protein ID:NP_001369705Link to BLAST:NP_001369705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027568.1 588 Q8NG27-3 588 100% 0 0
NP_001369705.1 588 Q8NG27-3 588 100% 0 0

Chromosomal Locations for CCDS 35316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 69161307 69163073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGCACAGATCAGCCCCCAGTCAAACCACCAAGAGGAGCCGATCGCCATTTTCCACTACTCGTCGTAGTT
GGGACGACAGCGAGAGTTCGGGAACCAACCTGAATATTGATAATGAGGACTATTCCAGGTATCCGCCAAG
AGAGTACAGAGCTTCGGGTAGCAGAAGAGGAATGGCCTATGGACATATTGACTCTTATGGGGCAGATGAT
AGTGAGGAGGAGGGGGCTGGGCCTGTTGAGCGACCGCCAGTGAGAGGGAAAACTGGCAAGTTTAAAGATG
ATAAGCTGTATGACCCAGAGAAAGGGGCAAGGTCTTTGGCTGGGCCACCTCCACATTTCTCTAGTTTTAG
CCGTGATGTGAGAGAGGAGCGAGACAAGTTAGACCCAGTCCCTGCAGCAAGATGCTCAGCTAGCAGAGCT
GACTTCCTGCCACAAAGTAGTGTGGCCTCACAGTCGTCTTCTGAAGGCAAGCTGGCTACAAAAGGTGACA
GCTCGGAGAGGGAGAGAAGGGAGCAAAATTTACCTGCACGTCCCAGCAGGGCTCCTGTGAGTATTTGTGG
TGGTGGGGAAAACACCTCAAAGAGTGCAGAGGAACCTGTGGTCAGGCCCAAAATCAGAAACCTGGCAAGT
CCAAACTGCGTGAAACCAAAAATTTTTTTTGATACTGATGATGATGACGATATGCCACACAGTACTTCCA
GGTGGAGGGATACCGCCAATGACAATGAGGGCCACTCGGATGGCCTGGCAAGAAGAGGGAGAGGCGAGAG
TTCAAGTGGCTATCCCGAGCCAAAGTACCCTGAAGACAAACGGGAAGCGAGGAGTGACCAAGTGAAACCA
GAAAAGGTGCCGAGACGACGACGCACCATGGCCGACCCTGACTTCTGGACGCACAGTGATGATTACTACA
AATACTGCGACGAAGACTCTGACAGTGACAAAGAGTGGATTGCTGCTCTGCGTCGGAAATATCGAAGCCG
AGAGCAAACCCTGTCCTCCAGTGGCGAAAGCTGGGAGACTCTGCCGGGGAAAGAAGAGCGGGAACCTCCA
CAGGCTAAGGTGAGTGCCAGCACTGGCACCAGCCCTGGCCCCGGTGCTAGTGCCAGTGCCGGGGCTGGCG
CCGGGGCCAGTGCTGGCAGCAATGGCAGCAATTACCTTGAAGAAGTTCGAGAACCATCTCTTCAGGAAGA
GCAGGCATCCCTGGAAGAAGGAGAAATTCCTTGGCTCCAGTACCATGAGAATGACAGTAGCAGTGAGGGG
GATAATGATTCTGGTCACGAGTTGATGCAACCTGGGGTATTCATGCTGGATGGAAACAACAACCTTGAAG
ATGACTCCAGTGTGAGCGAAGACCTAGAAGTGGATTGGAGCCTCTTTGATGGATTTGCAGATGGGTTAGG
AGTGGCTGAAGCCATTTCCTATGTGGACCCTCAGTTCCTCACCTACATGGCACTTGAAGAACGCCTGGCC
CAGGCAATGGAAACTGCCCTTGCGCACTTGGAGTCTCTCGCAGTGGATGTAGAGGTGGCCAATCCACCAG
CAAGCAAGGAGAGCATTGACGCTCTTCCCGAGATCCTGGTCACTGAAGATCATGGCGCAGTTGGTCAGGA
GATGTGCTGCCCCATCTGCTGTAGCGAATATGTGAAGGGGGAGGTGGCAACTGAGCTGCCGTGCCACCAC
TATTTCCACAAGCCGTGTGTGTCCATCTGGCTTCAGAAGTCAGGCACCTGCCCCGTGTGCCGCTGCATGT
TCCCTCCCCCACTCTAA

Translation (588 aa):
MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADD
SEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRA
DFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKP
EKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPP
QAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLA
QAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHH
YFHKPCVSIWLQKSGTCPVCRCMFPPPL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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