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Report for CCDS35192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35192.1 Public Homo sapiens XY CSF2RA 24 110 108 CCDS HistoryNCBI Gene:1438Re-query CCDS DB by CCDS ID:35192.1Re-query CCDS DB by GeneID:1438See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35192.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381500.6 ENSP00000370911.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381500.6Link to Ensembl Protein Viewer:ENSP00000370911.1Re-query CCDS DB by Nucleotide ID:ENST00000381500Re-query CCDS DB by Protein ID:ENSP00000370911
Original member Current member NCBI NM_001379167.1 NP_001366096.1 Accepted alive Link to Nucleotide Sequence:NM_001379167.1Link to Protein Sequence:NP_001366096.1Re-query CCDS DB by Nucleotide ID:NM_001379167Re-query CCDS DB by Protein ID:NP_001366096Link to BLAST:NP_001366096.1
Original member Current member NCBI NM_001379168.1 NP_001366097.1 Accepted alive Link to Nucleotide Sequence:NM_001379168.1Link to Protein Sequence:NP_001366097.1Re-query CCDS DB by Nucleotide ID:NM_001379168Re-query CCDS DB by Protein ID:NP_001366097Link to BLAST:NP_001366097.1
Original member Current member NCBI NM_001379169.1 NP_001366098.1 Accepted alive Link to Nucleotide Sequence:NM_001379169.1Link to Protein Sequence:NP_001366098.1Re-query CCDS DB by Nucleotide ID:NM_001379169Re-query CCDS DB by Protein ID:NP_001366098Link to BLAST:NP_001366098.1
Original member Current member NCBI NM_172247.3 NP_758450.1 Accepted alive Link to Nucleotide Sequence:NM_172247.3Link to Protein Sequence:NP_758450.1Re-query CCDS DB by Nucleotide ID:NM_172247Re-query CCDS DB by Protein ID:NP_758450Link to BLAST:NP_758450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366096.1 333 P15509-3 333 100% 0 0
NP_001366097.1 333 P15509-3 333 100% 0 0
NP_001366098.1 333 P15509-3 333 100% 0 0
NP_758450.1 333 P15509-3 333 100% 0 0

Chromosomal Locations for CCDS 35192.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11) On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 1282704 1282779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1285778 1285920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1288519 1288642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1288759 1288888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1290337 1290509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1294328 1294461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1295427 1295456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1300491 1300626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1305446 1305501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 1282704 1282779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1285778 1285920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1288519 1288642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1288759 1288888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1290337 1290509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1294328 1294461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1295427 1295456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1300491 1300626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1305446 1305501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCTTCTCCTGGTGACAAGCCTTCTGCTCTGTGAGTTACCACACCCAGCATTCCTCCTGATCCCAGAGA
AATCGGATCTGCGAACAGTGGCACCAGCCTCTAGTCTCAATGTGAGGTTTGACTCCAGGACGATGAATTT
AAGCTGGGACTGCCAAGAAAACACAACCTTCAGCAAGTGTTTCTTAACTGACAAGAAGAACAGAGTCGTG
GAACCCAGGCTCAGTAACAACGAATGTTCGTGCACATTTCGTGAAATTTGTCTGCATGAAGGAGTCACAT
TTGAGGTTCACGTGAATACTAGTCAAAGAGGATTTCAACAGAAACTGCTTTATCCAAATTCAGGAAGGGA
GGGTACCGCTGCTCAGAATTTCTCCTGTTTCATCTACAATGCGGATTTAATGAACTGTACCTGGGCGAGG
GGTCCGACGGCCCCCCGTGACGTCCAGTATTTTTTGTACATACGAAACTCAAAGAGAAGGAGGGAGATCC
GGTGTCCTTATTACATACAAGACTCAGGAACCCATGTGGGATGTCACCTGGATAACCTGTCAGGATTAAC
GTCTCGCAATTACTTTCTGGTTAACGGAACCAGCCGAGAAATTGGCATCCAATTCTTTGATTCACTTTTG
GACACAAAGAAAATAGAACGATTCAACCCTCCCAGCAATGTCACCGTACGTTGCAACACGACGCACTGCC
TCGTACGGTGGAAACAGCCCAGGACCTATCAGAAGCTGTCGTACCTGGACTTTCAGTACCAGCTGGACGT
CCACAGAAAGAATACCCAGCCTGGCACGGAAAACCTACTGATTAATGTTTCTGGTGATTTGGAAAATAGA
TACAACTTTCCAAGCTCTGAGCCCAGAGCAAAACACAGTGTGAAGATCAGAGCTGCAGACGTCCGCATCT
TGAATTGGAGCTCCTGGAGTGAAGCCATTGAATTTGGTTCCTTAGGATACAGCGGCTGTTCCCGCCAGTT
CCACAGATCAAAGACAAACTGA

Translation (333 aa):
MLLLVTSLLLCELPHPAFLLIPEKSDLRTVAPASSLNVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVV
EPRLSNNECSCTFREICLHEGVTFEVHVNTSQRGFQQKLLYPNSGREGTAAQNFSCFIYNADLMNCTWAR
GPTAPRDVQYFLYIRNSKRRREIRCPYYIQDSGTHVGCHLDNLSGLTSRNYFLVNGTSREIGIQFFDSLL
DTKKIERFNPPSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENR
YNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEFGSLGYSGCSRQFHRSKTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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