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Report for CCDS35173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35173.1 Public Homo sapiens 9 PAEP 24 110 108 CCDS HistoryNCBI Gene:5047Re-query CCDS DB by CCDS ID:35173.1Re-query CCDS DB by GeneID:5047See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000277508.9 ENSP00000277508.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000277508.9Link to Ensembl Protein Viewer:ENSP00000277508.5Re-query CCDS DB by Nucleotide ID:ENST00000277508Re-query CCDS DB by Protein ID:ENSP00000277508
Original member Current member EBI ENST00000371766.6 ENSP00000360831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371766.6Link to Ensembl Protein Viewer:ENSP00000360831.1Re-query CCDS DB by Nucleotide ID:ENST00000371766Re-query CCDS DB by Protein ID:ENSP00000360831
Original member Current member EBI ENST00000479141.6 ENSP00000417898.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000479141.6Link to Ensembl Protein Viewer:ENSP00000417898.1Re-query CCDS DB by Nucleotide ID:ENST00000479141Re-query CCDS DB by Protein ID:ENSP00000417898
Original member Current member NCBI NM_001018049.3 NP_001018059.1 Accepted alive Link to Nucleotide Sequence:NM_001018049.3Link to Protein Sequence:NP_001018059.1Re-query CCDS DB by Nucleotide ID:NM_001018049Re-query CCDS DB by Protein ID:NP_001018059Link to BLAST:NP_001018059.1
Original member Current member NCBI NM_002571.4 NP_002562.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002571.4Link to Protein Sequence:NP_002562.2Re-query CCDS DB by Nucleotide ID:NM_002571Re-query CCDS DB by Protein ID:NP_002562Link to BLAST:NP_002562.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018059.1 180 P09466-1 180 100% 0 0
NP_002562.2 180 P09466-1 180 100% 0 0

Chromosomal Locations for CCDS 35173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135561802 135561897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135562294 135562433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135562820 135562893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135564244 135564354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135565410 135565514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135565785 135565801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGCTGTGCCTCCTGCTCACCCTGGGCGTGGCCCTGGTCTGTGGTGTCCCGGCCATGGACATCCCCCAGA
CCAAGCAGGACCTGGAGCTCCCAAAGTTGGCAGGGACCTGGCACTCCATGGCCATGGCGACCAACAACAT
CTCCCTCATGGCGACACTGAAGGCCCCTCTGAGGGTCCACATCACCTCACTGTTGCCCACCCCCGAGGAC
AACCTGGAGATCGTTCTGCACAGATGGGAGAACAACAGCTGTGTTGAGAAGAAGGTCCTTGGAGAGAAGA
CTGAGAATCCAAAGAAGTTCAAGATCAACTATACGGTGGCGAACGAGGCCACGCTGCTCGATACTGACTA
CGACAATTTCCTGTTTCTCTGCCTACAGGACACCACCACCCCCATCCAGAGCATGATGTGCCAGTACCTG
GCCAGAGTCCTGGTGGAGGACGATGAGATCATGCAGGGATTCATCAGGGCTTTCAGGCCCCTGCCCAGGC
ACCTATGGTACTTGCTGGACTTGAAACAGATGGAAGAGCCGTGCCGTTTCTAG

Translation (180 aa):
MLCLLLTLGVALVCGVPAMDIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPED
NLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYL
ARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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