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Report for CCDS351.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
351.2 Public Homo sapiens 1 TMEM39B 24 110 108 CCDS HistoryNCBI Gene:55116Re-query CCDS DB by CCDS ID:351.2Re-query CCDS DB by GeneID:55116See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 351.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 351.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336294.10 ENSP00000338165.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336294.10Link to Ensembl Protein Viewer:ENSP00000338165.5Re-query CCDS DB by Nucleotide ID:ENST00000336294Re-query CCDS DB by Protein ID:ENSP00000338165
Original member Current member NCBI NM_018056.4 NP_060526.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018056.4Link to Protein Sequence:NP_060526.2Re-query CCDS DB by Nucleotide ID:NM_018056Re-query CCDS DB by Protein ID:NP_060526Link to BLAST:NP_060526.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060526.2 492 Q9GZU3-1 492 100% 0 0

Chromosomal Locations for CCDS 351.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32073048 32073051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32074951 32075077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32075603 32075822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32076763 32076846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32077164 32077318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32091675 32092011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32094784 32094971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32100442 32100562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32102431 32102673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGGAGGACGAAGAGGTCCCAACAGGACATCTTACTGTCGAAATCCGCTCTGTGAGCCGGGATCCTCGG
GGGGCTCTAGTGGAAGCCACACTTCCAGTGCATCGGTGACCAGTGTTCGTTCCCGCACCAGGAGCAGTTC
TGGAACAGGCCTCTCCAGCCCTCCTCTGGCCACCCAAACTGTTGTGCCTCTACAGCACTGCAAGATCCCC
GAGCTGCCAGTCCAGGCCAGCATTCTGTTTGAGTTGCAGCTCTTCTTCTGCCAGCTCATAGCACTCTTCG
TCCACTACATCAACATCTACAAGACAGTGTGGTGGTATCCACCTTCCCACCCACCCTCCCACACCTCCCT
GAACTTCCATCTGATCGACTTCAACTTGCTGATGGTGACCACCATCGTTCTGGGCCGCCGCTTCATTGGG
TCCATCGTGAAGGAGGCCTCTCAGAGGGGGAAGGTCTCCCTCTTTCGCTCCATCCTGCTGTTCCTCACTC
GCTTCACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCCTCATCCACCTCTTCAGGACCTACTC
CTTCCTGAACCTCCTGTTCCTCTGCTATCCGTTTGGGATGTACATTCCGTTCCTGCAGCTGAATTGCGAC
CTCCGCAAGACAAGCCTCTTCAACCACATGGCCTCCATGGGGCCCCGGGAGGCGGTCAGTGGCCTGGCAA
AGAGCCGGGACTACCTCCTGACACTGCGGGAGACGTGGAAGCAGCACACAAGACAGCTGTATGGCCCGGA
CGCCATGCCCACCCATGCCTGCTGCCTGTCACCCAGCCTCATCCGCAGTGAGGTGGAGTTCCTCAAGATG
GACTTCAACTGGCGCATGAAGGAAGTGCTCGTCAGCTCCATGCTGAGCGCCTACTATGTGGCCTTTGTGC
CTGTCTGGTTCGTGAAGAACACACATTACTATGACAAGCGCTGGTCCTGTGAACTCTTCCTGCTGGTGTC
CATCAGCACCTCCGTGATCCTCATGCAGCACCTGCTGCCTGCCAGCTACTGTGACCTGCTGCACAAGGCC
GCCGCCCATCTGGGCTGTTGGCAGAAGGTGGACCCAGCGCTGTGCTCCAACGTGCTGCAGCACCCGTGGA
CTGAAGAATGCATGTGGCCGCAGGGCGTGCTGGTGAAGCACAGCAAGAACGTCTACAAAGCCGTAGGCCA
CTACAACGTGGCTATCCCCTCTGACGTCTCCCACTTCCGCTTCCATTTCTTTTTCAGCAAACCCCTGCGG
ATCCTCAACATCCTCCTGCTGCTGGAGGGCGCTGTCATTGTCTATCAGCTGTACTCCCTAATGTCCTCTG
AAAAGTGGCACCAGACCATCTCGCTGGCCCTCATCCTCTTCAGCAACTACTATGCCTTCTTCAAGCTGCT
CCGGGACCGCTTGGTATTGGGCAAGGCCTACTCATACTCTGCTAGCCCCCAGAGAGACCTGGACCACCGT
TTCTCCTGA

Translation (492 aa):
MGGRRGPNRTSYCRNPLCEPGSSGGSSGSHTSSASVTSVRSRTRSSSGTGLSSPPLATQTVVPLQHCKIP
ELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHPPSHTSLNFHLIDFNLLMVTTIVLGRRFIG
SIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCD
LRKTSLFNHMASMGPREAVSGLAKSRDYLLTLRETWKQHTRQLYGPDAMPTHACCLSPSLIRSEVEFLKM
DFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKA
AAHLGCWQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSKPLR
ILNILLLLEGAVIVYQLYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYSYSASPQRDLDHR
FS


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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