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Report for CCDS35088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35088.1 Public Homo sapiens 9 OR13C4 24 110 108 CCDS HistoryNCBI Gene:138804Re-query CCDS DB by CCDS ID:35088.1Re-query CCDS DB by GeneID:138804See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000277216.3 ENSP00000277216.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000277216.3Link to Ensembl Protein Viewer:ENSP00000277216.3Re-query CCDS DB by Nucleotide ID:ENST00000277216Re-query CCDS DB by Protein ID:ENSP00000277216
Original member Current member NCBI NM_001001919.1 NP_001001919.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001919.1Link to Protein Sequence:NP_001001919.1Re-query CCDS DB by Nucleotide ID:NM_001001919Re-query CCDS DB by Protein ID:NP_001001919Link to BLAST:NP_001001919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001919.1 318 Q8NGS5 318 100% 0 0

Chromosomal Locations for CCDS 35088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104526253 104527209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGACAAGATAAACCAGACATTTGTGAGAGAATTCATTCTTCTGGGACTCTCTGGTTACCCCAAACTTG
AGATCATTTTCTTTGCTCTGATTCTAGTTATGTACGTAGTGATTCTAATTGGCAATGGTGTTCTGATCAT
AGCAAGCATCTTGGATTCTCGTCTTCACATGCCCATGTACTTCTTCCTGGGCAACCTCTCTTTCCTGGAT
ATCTGCTATACAACCTCCTCCATTCCCTCAACACTGGTGAGCTTAATCTCAAAGAAAAGAAACATTTCCT
TCTCTGGATGTGCAGTGCAGATGTTCTTTGGGTTTGCAATGGGGTCAACAGAATGTTTCCTCCTTGGCAT
GATGGCATTTGATCGTTATGTGGCCATCTGTAACCCTCTGAGATACCCCATCATCATGAACAAGGTGGTG
TATGTACTGCTGACTTCTGTATCATGGCTTTCTGGTGGAATCAATTCAACTGTGCAAACATCACTTGCCA
TGCGATGGCCTTTCTGTGGGAACAATATTATTAATCATTTCTTATGCGAGATCTTAGCTGTCCTAAAATT
AGCTTGTTCTGATATATCTGTCAATATTGTTACCCTAGCAGTGTCAAATATTGCTTTCCTAGTTCTTCCT
CTGCTCGTGATTTTTTTCTCCTATATGTTCATCCTCTACACCATCTTGCGAACGAACTCGGCCACAGGAA
GACACAAGGCATTTTCTACATGCTCAGCTCACCTGACTGTGGTGATCATATTTTATGGTACCATCTTCTT
TATGTATGCAAAACCTAAGTCCCAGGACCTCCTTGGGAAAGACAACTTGCAAGCTACAGAGGGGCTTGTT
TCCATGTTTTATGGGGTTGTGACCCCCATGTTAAACCCCATAATCTATAGCTTGAGAAATAAAGATGTAA
AAGCTGCTATAAAATATTTGCTGAGCAGGAAAGCTATTAACCAGTAA

Translation (318 aa):
MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIGNGVLIIASILDSRLHMPMYFFLGNLSFLD
ICYTTSSIPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECFLLGMMAFDRYVAICNPLRYPIIMNKVV
YVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKLACSDISVNIVTLAVSNIAFLVLP
LLVIFFSYMFILYTILRTNSATGRHKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATEGLV
SMFYGVVTPMLNPIIYSLRNKDVKAAIKYLLSRKAINQ


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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