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Report for CCDS3505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3505.1 Public Homo sapiens 4 PPAT 24 110 108 CCDS HistoryNCBI Gene:5471Re-query CCDS DB by CCDS ID:3505.1Re-query CCDS DB by GeneID:5471See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3505.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264220.6 ENSP00000264220.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264220.6Link to Ensembl Protein Viewer:ENSP00000264220.2Re-query CCDS DB by Nucleotide ID:ENST00000264220Re-query CCDS DB by Protein ID:ENSP00000264220
Original member Current member NCBI NM_002703.5 NP_002694.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002703.5Link to Protein Sequence:NP_002694.3Re-query CCDS DB by Nucleotide ID:NM_002703Re-query CCDS DB by Protein ID:NP_002694Link to BLAST:NP_002694.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002694.3 517 Q06203 517 100% 0 0

Chromosomal Locations for CCDS 3505.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56395352 56395548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56396619 56396739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56399179 56399400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56400784 56400911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56401330 56401481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56402109 56402181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56403040 56403185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56403289 56403401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56406495 56406701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56407650 56407716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56435350 56435477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGAGCTGGAGGAGTTGGGGATCCGAGAGGAATGTGGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGC
CCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCGGGGTCAGGAGAG
TGCTGGTATTGTGACTAGTGATGGGAGTTCGGTGCCAACATTCAAATCACACAAGGGAATGGGTCTTGTA
AATCACGTCTTTACTGAAGACAATTTGAAAAAATTATATGTTTCAAATCTTGGAATTGGACACACCAGGT
ATGCCACCACAGGAAAATGTGAACTAGAAAATTGTCAGCCCTTCGTTGTTGAAACACTTCATGGGAAGAT
AGCTGTGGCACATAATGGCGAATTGGTAAATGCTGCTCGATTAAGGAAAAAGCTTCTGCGTCATGGTATT
GGTCTGTCTACAAGTTCTGATAGTGAAATGATTACCCAGTTACTGGCGTATACCCCTCCTCAGGAACAAG
ATGACACCCCAGACTGGGTAGCCAGGATTAAAAACTTGATGAAGGAAGCACCCACAGCATACTCCCTGCT
TATAATGCACAGAGATGTTATTTATGCAGTACGAGATCCTTATGGAAATCGTCCCTTATGCATTGGTCGT
CTTATTCCAGTGTCTGATATAAATGACAAAGAGAAAAAAACATCAGAAACAGAAGGATGGGTGGTGTCTT
CAGAATCTTGTAGCTTCTTATCTATTGGTGCAAGATATTACCGTGAAGTCTTGCCTGGAGAAATTGTGGA
AATATCCAGACACAATGTCCAAACTCTTGATATTATATCAAGGTCTGAAGGAAACCCAGTGGCTTTTTGT
ATCTTTGAATATGTTTATTTTGCAAGACCAGACAGTATGTTCGAAGACCAAATGGTTTATACAGTAAGAT
ACCGTTGTGGCCAGCAGCTAGCGATTGAAGCACCTGTGGATGCAGATTTGGTTAGCACTGTTCCAGAATC
TGCTACGCCTGCTGCTCTTGCTTACGCAGGAAAGTGTGGACTTCCATATGTGGAGGTGCTGTGTAAAAAC
CGGTATGTAGGGAGAACCTTCATTCAGCCAAACATGAGGTTAAGACAACTTGGTGTTGCAAAAAAATTTG
GAGTATTGTCAGACAACTTTAAAGGCAAAAGAATTGTTCTTGTAGATGATTCAATTGTCAGAGGCAATAC
CATCTCACCTATAATAAAACTGCTCAAAGAATCTGGTGCAAAAGAGGTACACATTCGAGTAGCTTCACCA
CCAATTAAATATCCATGCTTCATGGGAATAAACATTCCTACAAAAGAAGAGCTCATTGCCAATAAACCAG
AATTTGATCACCTTGCAGAATATCTAGGAGCAAACAGTGTTGTGTATCTGTCAGTAGAAGGACTGGTTTC
ATCTGTACAAGAAGGGATAAAGTTTAAAAAACAGAAAGAGAAAAAGCACGATATTATGATCCAAGAAAAT
GGAAATGGTCTGGAATGTTTTGAAAAGAGTGGTCATTGTACAGCTTGTCTCACTGGAAAATATCCTGTAG
AATTAGAATGGTAG

Translation (517 aa):
MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHRGQESAGIVTSDGSSVPTFKSHKGMGLV
NHVFTEDNLKKLYVSNLGIGHTRYATTGKCELENCQPFVVETLHGKIAVAHNGELVNAARLRKKLLRHGI
GLSTSSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEAPTAYSLLIMHRDVIYAVRDPYGNRPLCIGR
LIPVSDINDKEKKTSETEGWVVSSESCSFLSIGARYYREVLPGEIVEISRHNVQTLDIISRSEGNPVAFC
IFEYVYFARPDSMFEDQMVYTVRYRCGQQLAIEAPVDADLVSTVPESATPAALAYAGKCGLPYVEVLCKN
RYVGRTFIQPNMRLRQLGVAKKFGVLSDNFKGKRIVLVDDSIVRGNTISPIIKLLKESGAKEVHIRVASP
PIKYPCFMGINIPTKEELIANKPEFDHLAEYLGANSVVYLSVEGLVSSVQEGIKFKKQKEKKHDIMIQEN
GNGLECFEKSGHCTACLTGKYPVELEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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