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Report for CCDS34942.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34942.2 Public Homo sapiens 8 EFR3A 24 110 108 CCDS HistoryNCBI Gene:23167Re-query CCDS DB by CCDS ID:34942.2Re-query CCDS DB by GeneID:23167See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34942.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254624.10 ENSP00000254624.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254624.10Link to Ensembl Protein Viewer:ENSP00000254624.5Re-query CCDS DB by Nucleotide ID:ENST00000254624Re-query CCDS DB by Protein ID:ENSP00000254624
Original member Current member NCBI NM_015137.6 NP_055952.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015137.6Link to Protein Sequence:NP_055952.2Re-query CCDS DB by Nucleotide ID:NM_015137Re-query CCDS DB by Protein ID:NP_055952Link to BLAST:NP_055952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055952.2 821 Q14156-1 821 100% 0 0

Chromosomal Locations for CCDS 34942.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 131904313 131904322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131940499 131940575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131944745 131944872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131946483 131946633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131949969 131950090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131953818 131953967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131955768 131955905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131959585 131959663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131968295 131968430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131970476 131970643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131976027 131976141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131977041 131977092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131978847 131979019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131979346 131979421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131984139 131984300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131984929 131985060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131986194 131986261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131987575 131987702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 131996406 131996497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132001759 132001807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132002603 132002706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132003236 132003285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132010790 132010895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGCCTACCCGAGTATGCTGCTGCTGTTCCGCTTTGCGTCCTCGCTACAAACGCCTGGTGGACAACATAT
TCCCTGAAGATCCAAAAGATGGCCTTGTGAAAACTGATATGGAGAAATTGACATTTTATGCAGTATCTGC
TCCAGAGAAACTGGATCGAATTGGTTCTTACCTGGCAGAAAGGTTGAGCAGGGATGTTGTCAGACATCGT
TCTGGGTATGTTTTGATTGCTATGGAGGCACTGGACCAACTTCTCATGGCTTGCCATTCTCAAAGCATTA
AGCCATTTGTAGAAAGCTTTCTTCATATGGTGGCAAAGCTGCTGGAATCGGGGGAACCAAAGCTTCAAGT
TCTTGGAACAAATTCTTTTGTCAAATTTGCAAATATTGAAGAAGACACACCATCCTATCACAGACGTTAT
GACTTTTTTGTGTCTCGATTCAGTGCCATGTGCCATTCCTGTCATAGTGATCCAGAAATACGAACAGAGA
TACGAATTGCTGGAATTAGAGGTATTCAAGGTGTGGTTCGCAAAACAGTCAACGATGAACTTCGGGCCAC
CATTTGGGAACCTCAGCATATGGATAAGATTGTTCCATCCCTCCTGTTTAACATGCAAAAGATAGAAGAA
GTTGACAGTCGCATAGGCCCTCCTTCTTCTCCTTCTGCAACTGACAAAGAAGAGAATCCTGCTGTGCTGG
CTGAAAACTGTTTCAGAGAACTGCTGGGTCGAGCAACTTTTGGGAATATGAATAATGCTGTTAGACCAGT
TTTTGCGCATTTAGATCATCACAAACTGTGGGATCCCAATGAATTTGCAGTTCACTGCTTTAAAATTATA
ATGTATTCCATTCAGGCTCAGTATTCTCACCATGTGATCCAGGAGATTCTAGGACACCTTGATGCTCGTA
AAAAAGATGCTCCCCGGGTTCGAGCAGGTATTATTCAGGTTCTGTTAGAGGCTGTTGCCATTGCTGCTAA
AGGTTCCATAGGTCCGACAGTGCTGGAAGTCTTCAATACCCTTTTGAAACATCTGCGTCTCAGCGTTGAA
TTCGAAGCAAATGATTTACAGGGGGGATCTGTAGGCAGTGTCAACTTAAATACAAGTTCCAAAGACAATG
ATGAGAAGATTGTGCAGAATGCTATCATCCAAACAATAGGATTTTTTGGAAGTAACCTACCAGATTATCA
GAGGTCAGAAATCATGATGTTCATTATGGGGAAAGTACCTGTCTTTGGAACATCTACCCATACTTTGGAT
ATCAGTCAACTAGGGGATTTGGGAACCAGGAGAATTCAGATAATGTTGCTGAGATCTTTGCTTATGGTGA
CCTCTGGATATAAAGCGAAGACGATTGTTACTGCACTGCCAGGGTCTTTCCTGGATCCTTTGTTATCACC
ATCTCTCATGGAGGACTACGAACTGAGACAGTTGGTCTTGGAAGTAATGCATAATCTCATGGATCGTCAT
GACAATAGGGCAAAGCTTCGAGGGATCAGAATAATACCGGATGTAGCTGACCTAAAGATAAAAAGAGAAA
AAATTTGCAGACAAGACACAAGTTTCATGAAAAAGAATGGGCAACAGCTGTATCGGCACATATATTTGGG
TTGTAAAGAGGAAGACAACGTTCAGAAAAACTATGAACTACTTTATACTTCTCTTGCTCTTATAACTATT
GAACTGGCTAATGAAGAAGTAGTTATTGATCTCATTCGACTGGCCATTGCTTTACAGGACAGTGCAATTA
TCAATGAGGATAATTTGCCAATGTTCCATCGTTGTGGAATCATGGCACTGGTTGCAGCATACCTCAACTT
TGTAAGTCAGATGATAGCTGTCCCTGCATTTTGCCAGCATGTTAGCAAGGTTATTGAAATTCGAACTATG
GAAGCCCCTTATTTTCTACCAGAGCATATCTTCAGAGATAAGTGCATGCTTCCAAAATCTTTAGAGAAGC
ATGAAAAAGATTTGTACTTTCTGACCAACAAGATTGCAGAGTCGCTAGGTGGAAGTGGATATAGTGTTGA
GAGATTGTCAGTTCCGTATGTACCACAAGTAACAGATGAAGATCGACTTTCTAGAAGAAAAAGCATTGTG
GACACCGTATCCATTCAGGTGGATATTTTATCCAACAATGTTCCTTCTGATGATGTGGTTAGTAACACTG
AAGAAATCACTTTTGAAGCATTGAAGAAAGCAATTGATACCAGTGGAATGGAAGAACAGGAAAAGGAAAA
GAGGCGTCTTGTGATAGAGAAATTTCAGAAAGCACCTTTTGAAGAAATAGCAGCACAGTGTGAATCCAAA
GCAAATTTGCTTCATGATAGACTTGCCCAAATATTGGAACTCACCATACGTCCTCCTCCCAGTCCATCAG
GAACACTGACCATTACTTCTGGGCATGCCCAATACCAATCTGTCCCAGTCTATGAGATGAAGTTTCCAGA
TCTGTGTGTGTACTGA

Translation (821 aa):
MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAERLSRDVVRHR
SGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRY
DFFVSRFSAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQKIEE
VDSRIGPPSSPSATDKEENPAVLAENCFRELLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHCFKII
MYSIQAQYSHHVIQEILGHLDARKKDAPRVRAGIIQVLLEAVAIAAKGSIGPTVLEVFNTLLKHLRLSVE
FEANDLQGGSVGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLD
ISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRH
DNRAKLRGIRIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITI
ELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIEIRTM
EAPYFLPEHIFRDKCMLPKSLEKHEKDLYFLTNKIAESLGGSGYSVERLSVPYVPQVTDEDRLSRRKSIV
DTVSIQVDILSNNVPSDDVVSNTEEITFEALKKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESK
ANLLHDRLAQILELTIRPPPSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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