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Report for CCDS34894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34894.1 Public Homo sapiens 8 TGS1 24 110 108 CCDS HistoryNCBI Gene:96764Re-query CCDS DB by CCDS ID:34894.1Re-query CCDS DB by GeneID:96764See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260129.6 ENSP00000260129.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260129.6Link to Ensembl Protein Viewer:ENSP00000260129.5Re-query CCDS DB by Nucleotide ID:ENST00000260129Re-query CCDS DB by Protein ID:ENSP00000260129
Original member Current member NCBI NM_024831.8 NP_079107.6 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024831.8Link to Protein Sequence:NP_079107.6Re-query CCDS DB by Nucleotide ID:NM_024831Re-query CCDS DB by Protein ID:NP_079107Link to BLAST:NP_079107.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079107.6 853 Q96RS0 853 100% 0 0

Chromosomal Locations for CCDS 34894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 55773619 55773719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55782748 55782812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55785719 55785891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55786238 55787060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55790182 55790299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55792698 55792784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55795978 55796152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55798914 55799220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55802457 55802606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55804893 55805036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55810881 55811097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55813040 55813118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55824581 55824703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTGCTGCGAGAAGTGGAGCCGCGTGGCGGAAATGTTTCTCTTCATTGAGGAGCGGGAGGATTGTAAGA
TACTGTGCCTTTGCTCCAGGGCATTTGTGGAGGATCGAAAATTGTACAATTTGGGATTAAAAGGCTATTA
CATCAGAGACAGTGGCAACAATTCAGGAGACCAGGCGACAGAAGAAGAGGAAGGTGGTTATTCCTGTGGT
ACTGCAGAATCACATGACAGCAAAGGCATAGGCCTGGATGAAAGTGAACTTGATTCTGAGGCTGAACTCA
TGAGAAGTATGGGATTGCCACTTCAATTTGGTAGGATAACTGCACATAAGGATTTTGAGGTATCTATGAA
TACTAGAAATAAAGTTAAAATAAAAAAGAAAAAACATCAAAAGAAATACTTAGATGAAATTGTGCAAGAA
TCTTGGAGAAAAGAATATGAAGAAGACGACATTTTGGCTTCAGATGATCCATCTTCAATTGAACAGTATG
AGAACACCAGAACATATGAACTTCAAAGCAAAAAAGATACTGAGACAGAAAATCCTCCAGTTGAAAACAC
ATTATCTCCAAAGCTAGAAATTACAGAGAAATGGGAAAAGTATTGGAATGAATATGGAGGAGGACTATTG
TGGCAAAGTTGGCAAGAAAAACATCCGGGTCAAGCACTATCTTCTGAACCTTGGAACTTTCCTGATACAA
AGGAAGAATGGGAGCAACATTATAGTCAACTTTATTGGTATTATTTGGAACAATTTCAGTATTGGGAAGC
TCAGGGTTGGACTTTTGATGCCTCGCAAAGCTGTGATACAGATACTTACACATCTAAAACAGAAGCTGAT
GACAAGAACGATGAAAAATGCATGAAAGTTGACTTAGTATCTTTTCCATCTTCACCTATTATGGTTGATA
ATGATAGCTCTGGTACAAGTGATAAGGATCATAGTGAAATACTTGATGGAATTAGTAACATAAAACTGAA
TTCAGAGGAAGTAACACAGAGCCAATTAGATTCCTGTACAAGTCATGATGGTCATCAACAGCTAAGTGAA
GTTAGTAGCAAAAGAGAGTGCCCTGCTTCCGGCCAAAGTGAACCACGTAATGGAGGAACCAATGAGGAAA
GCAACTCATCGGGGAATACAAACACAGACCCACCAGCTGAGGATTCACAGAAGTCTTCAGGAGCAAACAC
AAGCAAAGACAGACCACATGCCAGTGGTACTGATGGAGATGAAAGTGAGGAAGACCCACCTGAGCATAAG
CCAAGCAAACTGAAGAGGAGCCATGAACTGGACATTGATGAAAACCCAGCTTCAGACTTTGATGACAGTG
GTTCCCTTCTAGGATTCAAGTATGGCTCAGGACAAAAATATGGTGGAATCCCAAATTTCAGTCATCGGCA
GGTCAGGTATTTAGAGAAGAATGTGAAGCTTAAGTCTAAGTACCTAGACATGCGCAGACAAATAAAGATG
AAAAACAAACACATCTTCTTTACCAAAGAGTCAGAAAAACCATTTTTCAAGAAAAGCAAAATTCTGAGTA
AGGTAGAAAAATTCCTCACATGGGTTAATAAACCAATGGATGAAGAAGCATCACAGGAATCATCTTCTCA
TGACAATGTGCACGACGCTTCCACAAGTAGTGATTCAGAGGAACAAGACATGTCTGTTAAAAAAGGTGAT
GACCTACTGGAGACTAATAATCCAGAACCTGAAAAGTGTCAGAGCGTATCTTCAGCTGGTGAACTTGAAA
CAGAAAACTATGAAAGAGACAGCTTGCTAGCAACTGTTCCAGATGAGCAGGATTGTGTTACTCAAGAAGT
GCCAGACTCCCGCCAGGCAGAAACTGAAGCTGAAGTGAAAAAGAAGAAGAACAAGAAGAAGAACAAAAAG
GTGAATGGTCTGCCTCCTGAAATAGCTGCTGTTCCTGAGCTGGCAAAATACTGGGCCCAGAGGTACAGGC
TCTTCTCCCGTTTTGATGATGGGATTAAGTTGGACAGAGAGGGCTGGTTTTCAGTTACACCCGAGAAGAT
TGCTGAACACATTGCTGGCCGTGTTAGTCAGTCCTTCAAGTGTGACGTTGTAGTAGACGCATTCTGTGGA
GTTGGAGGAAATACCATTCAGTTTGCCTTAACAGGAATGAGAGTGATTGCCATTGATATCGATCCTGTTA
AGATTGCCCTTGCTCGCAATAATGCAGAAGTTTATGGGATAGCAGATAAGATAGAGTTCATCTGTGGAGA
TTTCTTGCTGCTGGCTTCTTTTTTAAAGGCTGATGTTGTGTTCCTCAGCCCACCTTGGGGAGGGCCAGAC
TATGCCACTGCAGAGACCTTTGACATTAGAACAATGATGTCTCCTGATGGCTTTGAAATTTTCAGACTTT
CTAAGAAGATCACTAATAATATTGTTTATTTTCTTCCAAGAAATGCTGATATTGACCAGGTGGCATCCTT
AGCTGGGCCTGGAGGGCAAGTGGAAATAGAACAGAACTTCCTTAACAACAAATTGAAGACAATCACTGCA
TATTTTGGTGACCTAATTCGAAGACCAGCCTCTGAAACCTAA

Translation (853 aa):
MCCEKWSRVAEMFLFIEEREDCKILCLCSRAFVEDRKLYNLGLKGYYIRDSGNNSGDQATEEEEGGYSCG
TAESHDSKGIGLDESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQE
SWRKEYEEDDILASDDPSSIEQYENTRTYELQSKKDTETENPPVENTLSPKLEITEKWEKYWNEYGGGLL
WQSWQEKHPGQALSSEPWNFPDTKEEWEQHYSQLYWYYLEQFQYWEAQGWTFDASQSCDTDTYTSKTEAD
DKNDEKCMKVDLVSFPSSPIMVDNDSSGTSDKDHSEILDGISNIKLNSEEVTQSQLDSCTSHDGHQQLSE
VSSKRECPASGQSEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRPHASGTDGDESEEDPPEHK
PSKLKRSHELDIDENPASDFDDSGSLLGFKYGSGQKYGGIPNFSHRQVRYLEKNVKLKSKYLDMRRQIKM
KNKHIFFTKESEKPFFKKSKILSKVEKFLTWVNKPMDEEASQESSSHDNVHDASTSSDSEEQDMSVKKGD
DLLETNNPEPEKCQSVSSAGELETENYERDSLLATVPDEQDCVTQEVPDSRQAETEAEVKKKKNKKKNKK
VNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCG
VGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPD
YATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITA
YFGDLIRRPASET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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