NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34762.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34762.2 Public Homo sapiens 7 RAB19 24 110 108 CCDS HistoryNCBI Gene:401409Re-query CCDS DB by CCDS ID:34762.2Re-query CCDS DB by GeneID:401409See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 34762.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and homology data. The previous representation lacked full-length support.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34762.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356407.3 ENSP00000348778.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356407.3Link to Ensembl Protein Viewer:ENSP00000348778.3Re-query CCDS DB by Nucleotide ID:ENST00000356407Re-query CCDS DB by Protein ID:ENSP00000348778
Original member Current member EBI ENST00000537763.6 ENSP00000440167.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537763.6Link to Ensembl Protein Viewer:ENSP00000440167.1Re-query CCDS DB by Nucleotide ID:ENST00000537763Re-query CCDS DB by Protein ID:ENSP00000440167
Original member Current member NCBI NM_001008749.3 NP_001008749.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008749.3Link to Protein Sequence:NP_001008749.2Re-query CCDS DB by Nucleotide ID:NM_001008749Re-query CCDS DB by Protein ID:NP_001008749Link to BLAST:NP_001008749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008749.2 217 A4D1S5-1 217 100% 0 0

Chromosomal Locations for CCDS 34762.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140407647 140407847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140411874 140412057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140425882 140426150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCACTTCTCCAGCTCAGCCAGGGCAGCAGATGAGAACTTTGACTATTTGTTCAAGATTATCCTCATTG
GGGATTCCAATGTGGGGAAGACGTGTGTGGTGCAGCATTTCAAGTCTGGAGTCTACACTGAGACACAGCA
GAACACGATTGGAGTGGACTTTACCGTGCGTTCCCTTGATATTGACGGCAAAAAAGTGAAGATGCAGGTG
TGGGACACAGCTGGCCAGGAGCGCTTCCGCACCATCACCCAAAGCTACTACCGCAGTGCCCACGCAGCCA
TCATCGCCTATGACCTCACCCGGCGGTCCACGTTCGAGTCCATCCCTCACTGGATTCATGAGATAGAGAA
ATATGGAGCTGCAAATGTGGTCATTATGCTGATTGGAAATAAATGTGACCTCTGGGAAAAGCGGCACGTC
CTGTTCGAGGATGCCTGCACACTGGCTGAGAAGTACGGCCTCCTGGCCGTTTTGGAGACATCTGCCAAGG
AGTCAAAGAACATAGAAGAAGTCTTCGTGCTCATGGCCAAGGAGCTGATCGCGCGCAACAGCCTGCACCT
ATATGGGGAGAGTGCCCTGAACGGCCTCCCCCTGGACTCCAGCCCCGTTCTTATGGCCCAGGGTCCAAGT
GAAAAGACCCACTGCACTTGCTAA

Translation (217 aa):
MHFSSSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQV
WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHV
LFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESALNGLPLDSSPVLMAQGPS
EKTHCTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH