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Report for CCDS34716.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34716.2 Public Homo sapiens 7 SPDYE2 24 110 108 CCDS HistoryNCBI Gene:441273Re-query CCDS DB by CCDS ID:34716.2Re-query CCDS DB by GeneID:441273See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 34716.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34716.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507918.6 ENSP00000421686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507918.6Link to Ensembl Protein Viewer:ENSP00000421686.1Re-query CCDS DB by Nucleotide ID:ENST00000507918Re-query CCDS DB by Protein ID:ENSP00000421686
Original member Current member EBI ENST00000691607.2 ENSP00000509749.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000691607.2Link to Ensembl Protein Viewer:ENSP00000509749.1Re-query CCDS DB by Nucleotide ID:ENST00000691607Re-query CCDS DB by Protein ID:ENSP00000509749
Original member Current member NCBI NM_001031618.3 NP_001026789.2 Accepted alive Link to Nucleotide Sequence:NM_001031618.3Link to Protein Sequence:NP_001026789.2Re-query CCDS DB by Nucleotide ID:NM_001031618Re-query CCDS DB by Protein ID:NP_001026789Link to BLAST:NP_001026789.2
Original member Current member NCBI NM_001396242.1 NP_001383171.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001396242.1Link to Protein Sequence:NP_001383171.1Re-query CCDS DB by Nucleotide ID:NM_001396242Re-query CCDS DB by Protein ID:NP_001383171Link to BLAST:NP_001383171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026789.2 402 Q495Y8-1 402 100% 0 0
NP_001383171.1 402 Q495Y8-1 402 100% 0 0

Chromosomal Locations for CCDS 34716.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102553256 102553415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102554359 102554577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102555900 102556130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102557164 102557222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102558467 102558552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102560600 102560993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102561116 102561175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGACAGAACGGAGACTAGGTTCCGTAAGAGGGGACAGATTACGGGAAAGATCACGACCAGCCGTCAAC
CGCACCCCCAGAATGAGCAGAGTCCCCAGCGGAGCACCTCGGGGTACCCCCTCCAGGAGGTGGTGGATGA
TGAAATGTTGGGACCATCAGCCCCTGGGGTAGATCCCAGCCCCCCATGTAGGTCCCTTGGCTGGAAAAGG
AAGAGGGAGTGGTCAGATGAATCTGAGGAGGAGCCGGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCT
GGGTAGTGGAGATGCTGTGTGGGCTCAAGATGAAGCTGAAGCAACAGCGAGTGTCACCCATCCTCCCTGA
GCACCACAAGGACTTCAACAGTCAGCTTGCCCCTGGGGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGC
TGGAAAAGGAAGATGGAGTGGTGGGACGAATCTGAGGAGTCGTTGGAGGAGGAGCCACGGAAGGTGCTCG
CCCCTGAGCCTGAGGAGATCTGGGTGGCGGAGATGCTGTGTGGCCTCAAGATGAAGCTGAAGCGACGGCG
AGTGTCGCTCGTGCTCCCTGAGCACCACGAGGCCTTCAACAGGCTGCTTGAGGATCCTGTCATTAAAAGA
TTCTTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCTATGGTCATAGCGTATTTCA
GCCGGGCCGGCTTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGGCTCTCTACCTGGCCAATGA
CATGGAGGAGGACGACGAGGACTCCAAACAAAACATCTTCCACTTCCTGTATAGGAAGAACCGCTCTCGC
ATACCCTTGCTCCGTAAGCCTTGGTTCCAGTTAGGCCATTCCATGAACCCGAGGGCCAGGAAGAACCGCT
CTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCACGAACCCGAGGGCCAGGAAGAA
CCGCTCTCGCATACCCTTGCTCCGTAAGCGTCGGTTCCAGTTATACCGTTCCATGAACTCGAGGGCCAGG
AAGAACCGCTCTCAGATAGTCCTGTTCCAGAAACGACGGTTCCACTTCTTCTGTTCCATGAGCTGCAGGG
CTTGGGTTTCCCCAGAGGAGTTGGAGGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTGGGCGCGAGA
TCGCGCTCACCTTTCCTAG

Translation (402 aa):
MDRTETRFRKRGQITGKITTSRQPHPQNEQSPQRSTSGYPLQEVVDDEMLGPSAPGVDPSPPCRSLGWKR
KREWSDESEEEPEKELAPEPEETWVVEMLCGLKMKLKQQRVSPILPEHHKDFNSQLAPGVDPSPPHRSFC
WKRKMEWWDESEESLEEEPRKVLAPEPEEIWVAEMLCGLKMKLKRRRVSLVLPEHHEAFNRLLEDPVIKR
FLAWDKDLRVSDKYLLAMVIAYFSRAGFPSWQYQRIHFFLALYLANDMEEDDEDSKQNIFHFLYRKNRSR
IPLLRKPWFQLGHSMNPRARKNRSRIPLLRKRRFQLYRSTNPRARKNRSRIPLLRKRRFQLYRSMNSRAR
KNRSQIVLFQKRRFHFFCSMSCRAWVSPEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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