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Report for CCDS347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
347.1 Public Homo sapiens 1 SPOCD1 24 110 108 CCDS HistoryNCBI Gene:90853Re-query CCDS DB by CCDS ID:347.1Re-query CCDS DB by GeneID:90853See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360482.7 ENSP00000353670.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360482.7Link to Ensembl Protein Viewer:ENSP00000353670.2Re-query CCDS DB by Nucleotide ID:ENST00000360482Re-query CCDS DB by Protein ID:ENSP00000353670
Original member Current member NCBI NM_144569.7 NP_653170.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144569.7Link to Protein Sequence:NP_653170.3Re-query CCDS DB by Nucleotide ID:NM_144569Re-query CCDS DB by Protein ID:NP_653170Link to BLAST:NP_653170.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653170.3 1216 Q6ZMY3-1 1216 100% 0 0

Chromosomal Locations for CCDS 347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31790603 31791291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31792215 31792401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31792678 31792767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31793278 31793428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31793747 31793897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31794124 31794235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31796590 31796715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31798207 31798323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31798442 31798601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31799401 31799485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31799809 31799863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31800016 31800141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31800441 31800617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31801664 31801705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31813951 31815333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGTCCCAGGCGGGGGACGTAGAAGGCCCCAGCACAGGAGACCCTGTGCTCAGTCCCCAACACAACTGTG
AGCTTTTACAGAACATGGAAGGAGCCAGCTCCATGCCAGGCCTGTCACCAGATGGGCCGGGAGCAAGCTC
TGGGCCCGGAGTCAGGGCTGGCAGCAGAAGGAAGATCCCCAGGAAGGAGGCCCTTCGAGGTGGCAGCTCC
CGGGCTGCAGGTGCTGCTGAGGTCCGGCCAGGGGTCTTGGAGCTGCTAGCTGTGGTACAGAGCCGGGGCT
CGATGCTGGCTCCTGGGCTCCACATGCAGCTGCCCTCGGTGCCTACTCAGGGGAGAGCTCTGACCTCCAA
GAGGCTCCAGGTTTCTCTGTGTGACATCTTAGATGACAGTTGCCCCAGGAAACTTTGTAGCAGGTCTGCT
GGCCTCCCAGAGAGAGCTCTGGCCTGCAGGGAGAGGCTTGCAGGAGTGGAGGAGGTGAGCTGCCTCAGGC
CCAGGGAGGCCAGAGACGGTGGAATGAGTTCTCCAGGGTGTGACAGAAGAAGCCCCACACTCAGCAAAGA
GGAGCCCCCTGGAAGGCCCCTGACATCCTCACCAGACCCAGTCCCTGTGAGGGTAAGAAAGAAATGGAGG
AGGCAAGGGGCTCATTCAGAGTGTGAGGAAGGGGCTGGTGACTTCCTGTGGCTTGATCAGAGCCCTCGTG
GGGACAACCTCCTGTCTGTGGGAGACCCTCCCCAAGTTGCTGACCTGGAGTCCTTGGGAGGCCCTTGCAG
ACCTCCCTCTCCAAAAGACACTGGGTCTGGGCCTGGAGAGCCAGGTGGAAGTGGGGCAGGATGTGCCTCA
GGGACTGAGAAATTTGGATATTTGCCCGCTACAGGGGATGGGCCCCAGCCAGGCAGCCCCTGTGGCCCTG
TCGGGTTCCCAGTGCCCAGTGGAGGGGAGTCCCTCAGTTCAGCTGCACAGGCTCCTCCACAGAGCGCAGC
ACTGTGCCTGGGGGCGTCAGCACAGGCCTCTGCAGAGCAGCAAGAAGCTGTGTGTGTCGTGCGGACTGGC
AGCGATGAAGGCCAGGCTCCAGCACAGGACCAGGAGGAGCTGGAGGCCAAGGCTCAGCCAGCTTCCAGGG
GAAGGCTGGAGCAAGGACTCGCTGCCCCCGCTGACACCTGTGCCAGCTCCCGGGAGCCCTTGGGCGGCCT
CAGCTCCTCCCTGGATACTGAAGCCAGCAGGGCCTGCTCAGGCCCATTCATGGAGCAGAGAAGATCCAAG
GGCACTAAGAACCTGAAGAAAGGTCCAGTGCCCTGTGCCCAAGACCGGGGCACAGACAGAAGCTCAGACA
ACTCCCACCAGGACAGGCCAGAGGAACCCAGCCCAGGAGGCTGCCCCAGACTGGAGGAAGTGAAAATACC
CCATGGAGTGAAGCTTGTGTGCTACCTGGGTTCCGGGCCAGTGATCCAGCTCCTGGGGGCCATCAGCCAC
GGCCAGGCAGGGGGGCAGCTGCCACCAAAGCTGGAGGTTCTAGAGGACTTGATGGAGGTCAGCTCACCCT
CACCTGCCCAGAGGCTCAGAAGGAAGAAAAGGCCCATGGTGCAGGGCCCTGCTGGGTGCCAGGTTTTCCA
GCCTTCTCCTTCAGGAGGCACAGCAGGGGACCCTGGTGGCCTCTCTGACCCCTTCTACCCTCCAAGAAGC
GGTTCCCTGGCCCTTGGCGACCCCAGCTCGGACCCTGCATGTTCCCAGAGTGGCCCAATGGAGGCTGAAG
AGGATTCTCTTCCGGAGCAGCCAGAGGACTCAGCTCAGCTCCAACAGGAGAAGCCATCCCTGTATATTGG
GGTGCGGGGCACTGTTGTCCGTTCCATGCAGGAGGTACTATGGACTCGCCTTCGGGAGCTCCCAGACCCA
GTGCTGAGTGAGGAGGTGGTGGAGGGCATTGCTGCTGGCATTGAGGCAGCCCTCTGGGACCTGACACAAG
GCACCAATGGCCGGTACAAGACCAAGTATCGCAGCCTGCTGTTCAACCTGCGGGACCCCAGGAACCTGGA
CTTGTTTCTCAAAGTGGTTCATGGAGATGTCACCCCCTACGACCTGGTGCGGATGAGCTCGATGCAGCTG
GCCCCCCAGGAGCTGGCCCGCTGGCGGGACCAGGAGGAGAAAAGGGGCCTGAATATCATTGAGCAGCAAC
AGAAGGAGCCGTGCAGACTTCCAGCCTCCAAAATGACCCACAAGGGCGAAGTGGAGATTCAGCGGGACAT
GGACCAGACACTGACCCTGGAGGATCTGGTGGGACCGCAGATGTTCATGGACTGCAGCCCACAGGCCCTG
CCCATCGCATCAGAGGACACCACGGGGCAGCATGACCACCACTTCTTAGACCCCAACTGCCACATCTGCA
AGGACTGGGAGCCCTCGAATGAGCTGCTAGGCTCCTTCGAAGCCGCCAAGAGCTGCGGGGACAATATCTT
CCAGAAAGCCCTAAGCCAAACTCCTATGCCTGCTCCAGAGATGCCCAAAACCAGGGAGTTGTCTCCCACG
GAACCACAGGACAGGGTCCCTCCATCTGGGCTCCATGTGCCTGCTGCACCCACAAAGGCCCTGCCCTGCC
TGCCACCCTGGGAAGGTGTTCTGGACATGTTCTCCATCAAGCGGTTCCGGGCCAGGGCCCAGCTGGTCTC
GGGACACAGCTGTCGGCTTGTCCAGGCTCTGCCCACCGTGATCCGCTCGGCAGGCTGCATCCCCTCCAAC
ATTGTCTGGGACCTTCTGGCCAGCATCTGCCCAGCCAAGGCCAAGGACGTCTGCGTGGTCAGACTGTGCC
CACATGGGGCCCGGGACACCCAGAACTGCCGCCTGCTCTACTCATACCTCAATGATAGGCAGCGCCACGG
GCTGGCCTCTGTGGAGCACATGGGGATGGTCCTGCTGCCCCTGCCTGCCTTCCAGCCCCTGCCCACCAGG
CTGCGCCCTTTGGGGGGCCCAGGCCTTTGGGCTCTTCCTGTCTCCCCTCTCCTTTCCCCAGGTCTGGAGG
TCACTCACTCAAGTCTGTTGCTGGCTGTGCTGCTCCCCAAGGAAGGGCTTCCAGACACAGCAGGGTCCAG
CCCCTGGTTGGGGAAGGTTCAAAAGATGGTCTCCTTCAACAGTAAGGTGGAGAAGAGATACTATCAGCCA
GATGACAGGAGGCCGAATGTGCCCCTGAAGGGCACCCCTCCCCCAGGAGGTGCCTGGCAGCAGAGCCAGG
GCAGGGGCAGTATAGCTCCAAGGGGAATCTCTGCTTGGCAGAGGCCCCCCAGAGGCAGGGGGAGGCTCTG
GCCAGAGCCTGAAAACTGGCAGCATCCTGGGCGAGGGCAGTGGCCCCCAGAGCCAGGCTTGCGCCAGTCC
CAGCATCCCTATTCAGTAGCACCAGCTGGTCATGGCTTTGGCCGTGGCCAGCACTTCCACAGGGACTCCT
GTCCCCACCAAGCCCTGCTCCGGCACCTCGAATCCCTGGCGACCATGAGTCACCAGCTCCAAGCCTTACT
GTGCCCCCAGACCAAGAGCTCCATCCCCCGCCCTCTGCAGCGTTTGTCTAGCGCCCTTGCAGCTCCAGAG
CCCCCTGGCCCAGCCCGTGACTCCTCTTTGGGGCCTACAGATGAAGCTGGCTCTGAGTGTCCCTTCCCTA
GAAAGGCCTGA

Translation (1216 aa):
MSQAGDVEGPSTGDPVLSPQHNCELLQNMEGASSMPGLSPDGPGASSGPGVRAGSRRKIPRKEALRGGSS
RAAGAAEVRPGVLELLAVVQSRGSMLAPGLHMQLPSVPTQGRALTSKRLQVSLCDILDDSCPRKLCSRSA
GLPERALACRERLAGVEEVSCLRPREARDGGMSSPGCDRRSPTLSKEEPPGRPLTSSPDPVPVRVRKKWR
RQGAHSECEEGAGDFLWLDQSPRGDNLLSVGDPPQVADLESLGGPCRPPSPKDTGSGPGEPGGSGAGCAS
GTEKFGYLPATGDGPQPGSPCGPVGFPVPSGGESLSSAAQAPPQSAALCLGASAQASAEQQEAVCVVRTG
SDEGQAPAQDQEELEAKAQPASRGRLEQGLAAPADTCASSREPLGGLSSSLDTEASRACSGPFMEQRRSK
GTKNLKKGPVPCAQDRGTDRSSDNSHQDRPEEPSPGGCPRLEEVKIPHGVKLVCYLGSGPVIQLLGAISH
GQAGGQLPPKLEVLEDLMEVSSPSPAQRLRRKKRPMVQGPAGCQVFQPSPSGGTAGDPGGLSDPFYPPRS
GSLALGDPSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRLRELPDP
VLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQL
APQELARWRDQEEKRGLNIIEQQQKEPCRLPASKMTHKGEVEIQRDMDQTLTLEDLVGPQMFMDCSPQAL
PIASEDTTGQHDHHFLDPNCHICKDWEPSNELLGSFEAAKSCGDNIFQKALSQTPMPAPEMPKTRELSPT
EPQDRVPPSGLHVPAAPTKALPCLPPWEGVLDMFSIKRFRARAQLVSGHSCRLVQALPTVIRSAGCIPSN
IVWDLLASICPAKAKDVCVVRLCPHGARDTQNCRLLYSYLNDRQRHGLASVEHMGMVLLPLPAFQPLPTR
LRPLGGPGLWALPVSPLLSPGLEVTHSSLLLAVLLPKEGLPDTAGSSPWLGKVQKMVSFNSKVEKRYYQP
DDRRPNVPLKGTPPPGGAWQQSQGRGSIAPRGISAWQRPPRGRGRLWPEPENWQHPGRGQWPPEPGLRQS
QHPYSVAPAGHGFGRGQHFHRDSCPHQALLRHLESLATMSHQLQALLCPQTKSSIPRPLQRLSSALAAPE
PPGPARDSSLGPTDEAGSECPFPRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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