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Report for CCDS3464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3464.1 Public Homo sapiens 4 TMEM33 24 110 108 CCDS HistoryNCBI Gene:55161Re-query CCDS DB by CCDS ID:3464.1Re-query CCDS DB by GeneID:55161See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504986.6 ENSP00000422473.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504986.6Link to Ensembl Protein Viewer:ENSP00000422473.1Re-query CCDS DB by Nucleotide ID:ENST00000504986Re-query CCDS DB by Protein ID:ENSP00000422473
Original member Current member EBI ENST00000513702.5 ENSP00000427006.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513702.5Link to Ensembl Protein Viewer:ENSP00000427006.1Re-query CCDS DB by Nucleotide ID:ENST00000513702Re-query CCDS DB by Protein ID:ENSP00000427006
Original member Current member EBI ENST00000325094.9 ENSP00000441455.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325094.9Link to Ensembl Protein Viewer:ENSP00000441455.1Re-query CCDS DB by Nucleotide ID:ENST00000325094Re-query CCDS DB by Protein ID:ENSP00000441455
Original member Current member NCBI NM_018126.3 NP_060596.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018126.3Link to Protein Sequence:NP_060596.2Re-query CCDS DB by Nucleotide ID:NM_018126Re-query CCDS DB by Protein ID:NP_060596Link to BLAST:NP_060596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060596.2 247 P57088 247 100% 0 0

Chromosomal Locations for CCDS 3464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41935485 41935529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41938602 41938696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41939196 41939383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41943747 41943814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41944793 41944926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41949302 41949385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41954070 41954199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCAGATACGACCCCGAACGGCCCCCAAGGGGCGGGCGCTGTGCAATTCATGATGACCAATAAACTGG
ACACGGCAATGTGGCTTTCTCGCTTGTTCACAGTTTACTGCTCTGCTCTGTTTGTTCTGCCTCTTCTTGG
GTTGCATGAAGCAGCAAGCTTTTACCAACGTGCTTTGCTGGCAAATGCTCTTACCAGTGCTCTGAGGCTG
CATCAAAGATTACCACACTTCCAGTTAAGCAGAGCATTCCTGGCCCAGGCTTTGTTAGAGGACAGCTGCC
ACTACCTGTTGTATTCACTCATCTTTGTAAATTCCTATCCAGTTACAATGAGTATCTTCCCAGTCTTGTT
ATTCTCTTTGCTTCATGCTGCCACATATACGAAAAAGGTCCTTGACGCAAGGGGCTCAAATAGTTTACCT
CTGCTGAGATCTGTCTTGGACAAATTAAGTGCTAATCAACAAAATATTCTGAAATTCATTGCTTGCAATG
AAATATTCCTGATGCCTGCGACAGTTTTTATGCTTTTTAGTGGTCAAGGAAGTTTGCTCCAACCTTTTAT
ATACTATAGATTTCTTACCCTTCGATATTCGTCTCGAAGAAACCCATATTGTCGGACCTTATTTAATGAA
CTGAGGATTGTTGTTGAACACATAATAATGAAACCTGCTTGCCCACTGTTTGTGAGAAGACTTTGTCTCC
AGAGCATTGCCTTTATAAGCAGATTGGCACCAACAGTTCCATAG

Translation (247 aa):
MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRL
HQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDARGSNSLP
LLRSVLDKLSANQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNE
LRIVVEHIIMKPACPLFVRRLCLQSIAFISRLAPTVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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