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Report for CCDS34518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34518.1 Public Homo sapiens 6 TSPYL1 24 110 108 CCDS HistoryNCBI Gene:7259Re-query CCDS DB by CCDS ID:34518.1Re-query CCDS DB by GeneID:7259See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368608.4 ENSP00000357597.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368608.4Link to Ensembl Protein Viewer:ENSP00000357597.4Re-query CCDS DB by Nucleotide ID:ENST00000368608Re-query CCDS DB by Protein ID:ENSP00000357597
Original member Current member EBI ENST00000652202.1 ENSP00000498597.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652202.1Link to Ensembl Protein Viewer:ENSP00000498597.1Re-query CCDS DB by Nucleotide ID:ENST00000652202Re-query CCDS DB by Protein ID:ENSP00000498597
Original member Current member NCBI NM_003309.4 NP_003300.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003309.4Link to Protein Sequence:NP_003300.1Re-query CCDS DB by Nucleotide ID:NM_003309Re-query CCDS DB by Protein ID:NP_003300Link to BLAST:NP_003300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003300.1 437 Q9H0U9 437 100% 0 0

Chromosomal Locations for CCDS 34518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116278517 116279830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAGCGGCCTGGATGGGGTCAAGAGGACCACTCCCCTCCAAACCCACAGCATCATTATTTCTGACCAAG
TCCCGAGCGACCAGGACGCACACCAGTACCTGAGGCTCCGCGACCAAAGCGAGGCGACACAGGTGATGGC
GGAGCCGGGTGAGGGAGGCTCGGAGACCGTCGCGCTCCCGCCTCCACCGCCTTCAGAGGAGGGGGGCGTA
CCCCAGGATGCCGCGGGCCGTGGCGGTACTCCCCAGATCCGAGTTGTTGGGGGTCGCGGTCATGTGGCGA
TCAAAGCCGGGCAGGAAGAGGGCCAGCCTCCCGCCGAAGGCCTGGCAGCCGCTTCTGTGGTGATGGCAGC
CGACCGCAGCCTGAAAAAGGGCGTTCAGGGTGGAGAGAAGGCCCTAGAAATCTGTGGCGCCCAGAGATCC
GCGTCTGAGCTGACGGCGGGGGCGGAGGCTGAGGCGGAGGAGGTGAAGACAGGAAAGTGCGCCACCGTCT
CAGCAGCCGTGGCTGAGAGGGAGAGCGCTGAGGTGGTGAAGGAAGGCCTGGCGGAGAAGGAGGTAATGGA
GGAGCAGATGGAGGTAGAGGAGCAGCCGCCAGAAGGTGAAGAAATAGAAGTGGCGGAGGAGGATAGATTG
GAGGAGGAGGCGAGGGAGGAAGAAGGGCCCTGGCCTTTGCATGAGGCTCTCCGCATGGACCCTCTGGAGG
CCATCCAGCTGGAACTGGACACTGTGAATGCTCAGGCCGACAGGGCCTTCCAACAGCTGGAGCACAAGTT
TGGGCGGATGCGTCGACACTACCTGGAGCGGAGGAACTACATCATTCAGAATATCCCGGGCTTCTGGATG
ACTGCTTTTCGAAACCACCCCCAGTTGTCCGCCATGATTAGGGGCCAAGATGCAGAGATGTTAAGGTACA
TAACCAATTTAGAGGTGAAGGAACTCAGACACCCTAGAACCGGTTGCAAGTTCAAGTTCTTCTTTAGAAG
AAACCCCTACTTCAGAAACAAGCTGATTGTCAAGGAATATGAGGTAAGATCCTCCGGCCGAGTGGTGTCT
CTTTCTACTCCAATTATATGGCGCAGGGGGCATGAACCCCAGTCCTTCATTCGCAGAAACCAAGACCTCA
TCTGCAGCTTCTTCACTTGGTTTTCAGACCACAGCCTTCCAGAGTCCGACAAAATTGCTGAGATTATTAA
AGAGGATCTGTGGCCAAATCCACTGCAATACTACCTGTTGCGTGAAGGAGTCCGTAGAGCCCGACGTCGC
CCGCTAAGGGAGCCTGTAGAGATCCCCAGGCCCTTTGGGTTCCAGTCTGGTTAA

Translation (437 aa):
MSGLDGVKRTTPLQTHSIIISDQVPSDQDAHQYLRLRDQSEATQVMAEPGEGGSETVALPPPPPSEEGGV
PQDAAGRGGTPQIRVVGGRGHVAIKAGQEEGQPPAEGLAAASVVMAADRSLKKGVQGGEKALEICGAQRS
ASELTAGAEAEAEEVKTGKCATVSAAVAERESAEVVKEGLAEKEVMEEQMEVEEQPPEGEEIEVAEEDRL
EEEAREEEGPWPLHEALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWM
TAFRNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYEVRSSGRVVS
LSTPIIWRRGHEPQSFIRRNQDLICSFFTWFSDHSLPESDKIAEIIKEDLWPNPLQYYLLREGVRRARRR
PLREPVEIPRPFGFQSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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