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Report for CCDS34476.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34476.2 Public Homo sapiens 6 DEFB112 24 110 108 CCDS HistoryNCBI Gene:245915Re-query CCDS DB by CCDS ID:34476.2Re-query CCDS DB by GeneID:245915See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 34476.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651554.2 ENSP00000499066.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651554.2Link to Ensembl Protein Viewer:ENSP00000499066.1Re-query CCDS DB by Nucleotide ID:ENST00000651554Re-query CCDS DB by Protein ID:ENSP00000499066
Original member Current member NCBI NM_001369057.2 NP_001355986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369057.2Link to Protein Sequence:NP_001355986.1Re-query CCDS DB by Nucleotide ID:NM_001369057Re-query CCDS DB by Protein ID:NP_001355986Link to BLAST:NP_001355986.1

Chromosomal Locations for CCDS 34476.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50043575 50043801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50049812 50049869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGAAGATCCTTCTCTTTTTCTGTATTTTGCTTTTCTTTGGAGTCCTTATTCCACCAGCCAGAAGTGAAG
GGCACCATATCACCTTTAGTAGGTGGAAGTCATGTACAGCGATTGGAGGTCGATGTAAAAATCAATGTGA
TGATAGTGAATTTAGGATTTCATACTGTGCAAGACCTACAACTCATTGCTGCGTGACAGAATGTGACCCT
ACGGACCCAAATAATTGGATCCCAAAGGACTCAGTAGGGACTCAAGAATGGTACCCTAAAGACTCACGTC
ATTGA

Translation (94 aa):
MKILLFFCILLFFGVLIPPARSEGHHITFSRWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCCVTECDP
TDPNNWIPKDSVGTQEWYPKDSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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