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Report for CCDS34447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34447.1 Public Homo sapiens 6 FOXP4 24 110 108 CCDS HistoryNCBI Gene:116113Re-query CCDS DB by CCDS ID:34447.1Re-query CCDS DB by GeneID:116113See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307972.10 ENSP00000309823.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307972.10Link to Ensembl Protein Viewer:ENSP00000309823.4Re-query CCDS DB by Nucleotide ID:ENST00000307972Re-query CCDS DB by Protein ID:ENSP00000309823
Original member Current member EBI ENST00000704756.1 ENSP00000516024.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704756.1Link to Ensembl Protein Viewer:ENSP00000516024.1Re-query CCDS DB by Nucleotide ID:ENST00000704756Re-query CCDS DB by Protein ID:ENSP00000516024
Original member Current member NCBI NM_001012426.2 NP_001012426.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012426.2Link to Protein Sequence:NP_001012426.1Re-query CCDS DB by Nucleotide ID:NM_001012426Re-query CCDS DB by Protein ID:NP_001012426Link to BLAST:NP_001012426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012426.1 680 Q8IVH2-1 680 100% 0 0

Chromosomal Locations for CCDS 34447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41565761 41565964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41577986 41578081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41584769 41584891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41585431 41585517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41587009 41587156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41587299 41587512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41587793 41587897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41588644 41588731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41589771 41589854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41589963 41590170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41590271 41590347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41591221 41591322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41594870 41594991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41597176 41597242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41597781 41597950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41598789 41598936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGATGGTGGAATCTGCCTCGGAGACAATCAGGTCGGCTCCATCTGGTCAGAATGGCGTGGGCAGCCTCT
CTGGGCAAGCCGATGGCAGCAGCGGCGGGGCCACAGGGACAACTGCAAGTGGCACGGGCAGGGAAGTGAC
CACGGGTGCAGACAGCAATGGTGAGATGAGTCCCGCAGAGCTGCTGCACTTCCAGCAGCAACAGGCTCTC
CAAGTGGCCCGGCAGTTCCTGCTGCAGCAGGCCTCAGGCCTGAGCTCCCCAGGGAACAATGACAGCAAAC
AGTCTGCCTCTGCTGTGCAGGTGCCTGTGTCGGTGGCCATGATGTCGCCGCAGATGCTTACCCCGCAACA
GATGCAGCAGATCCTGTCGCCCCCGCAGCTGCAGGCCTTGCTCCAGCAGCAGCAAGCCCTCATGCTCCAG
CAGCTACAGGAGTACTACAAGAAGCAGCAGGAGCAGCTCCACCTGCAGCTCCTCACCCAGCAGCAGGCTG
GGAAACCGCAGCCCAAAGAGGCACTGGGGAACAAGCAGCTGGCCTTCCAGCAGCAGCTCCTGCAAATGCA
ACAGTTGCAGCAGCAGCACCTGCTCAACCTGCAGAGGCAGGGGCTGGTCAGCCTGCAGCCCAACCAAGCC
TCGGGGCCCCTCCAGACCCTTCCGCAAGCAGCTGTTTGCCCAACAGACCTGCCCCAGCTGTGGAAGGGCG
AGGGTGCCCCCGGGCAGCCTGCCGAGGACAGCGTCAAGCAGGAGGGGCTGGACCTCACTGGCACGGCCGC
CACCGCTACCTCGTTTGCCGCTCCCCCCAAGGTCTCACCCCCCCTCTCCCACCATACCCTGCCCAACGGA
CAGCCTACTGTGCTCACATCTCGGAGAGACAGCTCTTCCCACGAGGAGACCCCCGGCTCCCACCCCCTGT
ACGGACACGGAGAGTGCAAGTGGCCAGGCTGTGAGACCCTGTGTGAAGACCTGGGCCAGTTTATCAAACA
CCTCAACACAGAGCACGCCCTGGATGACCGGAGTACAGCCCAGTGCCGGGTACAGATGCAGGTGGTGCAG
CAGCTGGAGATCCAGCTCGCCAAGGAGAGCGAGCGGCTGCAGGCCATGATGGCCCACCTGCACATGCGGC
CCTCGGAGCCCAAGCCCTTCAGCCAGCCACTGAACCCGGTCCCCGGCTCCTCCTCATTCTCCAAGGTGAC
CGTCTCTGCAGCAGACTCATTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGCCCCTGTCACC
CCTCTACGGCCCCCTGGCCTGGGCTCTGCCTCCCTGCATGGTGGGGGCCCAGCCCGTCGGAGAAGCAGTG
ACAAGTTCTGCTCCCCCATCTCCTCAGAGCTGGCCCAGAATCATGAGTTCTACAAGAACGCCGACGTCCG
GCCCCCCTTCACCTACGCCTCCCTCATCCGCCAGGCCATCCTGGAAACCCCTGACAGGCAGCTGACCCTG
AATGAGATCTATAACTGGTTCACCAGGATGTTCGCCTATTTCCGCAGAAACACTGCCACCTGGAAGAACG
CCGTGCGCCACAACCTCAGCCTGCACAAGTGCTTCGTCCGCGTGGAGAACGTCAAGGGTGCCGTGTGGAC
TGTGGACGAGCGGGAGTATCAGAAGCGGAGACCGCCAAAGATGACAGGGAGCCCCACCCTGGTGAAGAAC
ATGATCTCTGGCCTCAGCTATGGAGCACTTAATGCCAGCTACCAGGCCGCCCTGGCCGAGAGCAGCTTCC
CCCTCCTCAACAGCCCTGGCATGCTGAACCCTGGCTCCGCCAGCAGCCTGCTGCCCCTCAGCCACGATGA
CGTGGGTGCCCCCGTGGAGCCGCTGCCCAGCAACGGCAGCAGCAGCCCTCCTCGCCTCTCCCCGCCCCAG
TACAGCCACCAGGTGCAGGTGAAGGAGGAGCCAGCAGAGGCAGAGGAAGACAGGCAGCCCGGGCCTCCCC
TGGGCGCCCCTAACCCCAGCGCCTCGGGGCCTCCGGAAGACAGGGACCTGGAGGAGGAGCTGCCGGGAGA
AGAACTGTCCTAA

Translation (680 aa):
MMVESASETIRSAPSGQNGVGSLSGQADGSSGGATGTTASGTGREVTTGADSNGEMSPAELLHFQQQQAL
QVARQFLLQQASGLSSPGNNDSKQSASAVQVPVSVAMMSPQMLTPQQMQQILSPPQLQALLQQQQALMLQ
QLQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNKQLAFQQQLLQMQQLQQQHLLNLQRQGLVSLQPNQA
SGPLQTLPQAAVCPTDLPQLWKGEGAPGQPAEDSVKQEGLDLTGTAATATSFAAPPKVSPPLSHHTLPNG
QPTVLTSRRDSSSHEETPGSHPLYGHGECKWPGCETLCEDLGQFIKHLNTEHALDDRSTAQCRVQMQVVQ
QLEIQLAKESERLQAMMAHLHMRPSEPKPFSQPLNPVPGSSSFSKVTVSAADSFPDGLVHPPTSAAAPVT
PLRPPGLGSASLHGGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTL
NEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKN
MISGLSYGALNASYQAALAESSFPLLNSPGMLNPGSASSLLPLSHDDVGAPVEPLPSNGSSSPPRLSPPQ
YSHQVQVKEEPAEAEEDRQPGPPLGAPNPSASGPPEDRDLEEELPGEELS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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