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Report for CCDS34401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34401.2 Public Homo sapiens 6 LY6G5C 24 110 108 CCDS HistoryNCBI Gene:80741Re-query CCDS DB by CCDS ID:34401.2Re-query CCDS DB by GeneID:80741See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 34401.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34401.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383237.5 ENSP00000372724.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383237.5Link to Ensembl Protein Viewer:ENSP00000372724.4Re-query CCDS DB by Nucleotide ID:ENST00000383237Re-query CCDS DB by Protein ID:ENSP00000372724
Original member Current member NCBI NM_025262.4 NP_079538.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025262.4Link to Protein Sequence:NP_079538.3Re-query CCDS DB by Nucleotide ID:NM_025262Re-query CCDS DB by Protein ID:NP_079538Link to BLAST:NP_079538.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079538.3 150 Q5SRR4-1 150 100% 0 0

Chromosomal Locations for CCDS 34401.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31676957 31677120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31679101 31679268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31680253 31680373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGCGTTTTATGGCAGGCCCTGCAGGGAGCCAGAGTCTGGGTCCCCTGTGCTTCCACAGCAGCCCCCAAG
CCCTCTACACGGTCCTCTTAATAGTGCTGGTCATGATGAGCTTGGTGTTTGGTAAGTTTGTTCCTGTCAA
TTGGGAACCCCCTCAACCACTTCCATTCCCCAAATACCTGCGCTGCTACCGATGCCTCTTGGAGACCAAG
GAGTTAGGGTGCCTTCTGGGATCTGACATCTGCCTCACCCCAGCTGGCAGCAGCTGCATCACTCTCCACA
AAAAGAACAGCAGCGGTTCTGACGTCATGGTGAGTGACTGCCGAAGTAAGGAGCAGATGAGTGATTGTTC
AAATACCCGAACTTCTCCGGTGTCTGGCTTCTGGATATTCTCTCAATACTGCTTCCTGGATTTCTGCAAT
GACCCTCAAAACAGAGGGCTCTATACTCCTTAG

Translation (150 aa):
MRFMAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCYRCLLETK
ELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSPVSGFWIFSQYCFLDFCN
DPQNRGLYTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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