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Report for CCDS34398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34398.1 Public Homo sapiens 6 AIF1 24 110 108 CCDS HistoryNCBI Gene:199Re-query CCDS DB by CCDS ID:34398.1Re-query CCDS DB by GeneID:199See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376049.4 ENSP00000365217.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376049.4Link to Ensembl Protein Viewer:ENSP00000365217.4Re-query CCDS DB by Nucleotide ID:ENST00000376049Re-query CCDS DB by Protein ID:ENSP00000365217
Original member Current member NCBI NM_001318970.2 NP_001305899.1 Accepted alive Link to Nucleotide Sequence:NM_001318970.2Link to Protein Sequence:NP_001305899.1Re-query CCDS DB by Nucleotide ID:NM_001318970Re-query CCDS DB by Protein ID:NP_001305899Link to BLAST:NP_001305899.1
Original member Current member NCBI NM_032955.3 NP_116573.1 Accepted alive Link to Nucleotide Sequence:NM_032955.3Link to Protein Sequence:NP_116573.1Re-query CCDS DB by Nucleotide ID:NM_032955Re-query CCDS DB by Protein ID:NP_116573Link to BLAST:NP_116573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305899.1 93 P55008-2 93 100% 0 0
NP_116573.1 93 P55008-2 93 100% 0 0

Chromosomal Locations for CCDS 34398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31616112 31616145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31616344 31616506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31616816 31616900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGGAGTTTGACCTTAATGGAAATGGCGATATTGATATCATGTCCCTGAAACGAATGCTGGAGAAACTTG
GAGTCCCCAAGACTCACCTAGAGCTAAAGAAATTAATTGGAGAGGTGTCCAGTGGCTCCGGGGAGACGTT
CAGCTACCCTGACTTTCTCAGGATGATGCTGGGCAAGAGATCTGCCATCCTAAAAATGATCCTGATGTAT
GAGGAAAAAGCGAGAGAAAAGGAAAAGCCAACAGGCCCCCCAGCCAAGAAAGCTATCTCTGAGTTGCCCT
GA

Translation (93 aa):
MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKMILMY
EEKAREKEKPTGPPAKKAISELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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