NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34389.1 Public Homo sapiens 6 CDSN 24 110 108 CCDS HistoryNCBI Gene:1041Re-query CCDS DB by CCDS ID:34389.1Re-query CCDS DB by GeneID:1041See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376288.3 ENSP00000365465.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376288.3Link to Ensembl Protein Viewer:ENSP00000365465.2Re-query CCDS DB by Nucleotide ID:ENST00000376288Re-query CCDS DB by Protein ID:ENSP00000365465
Original member Current member NCBI NM_001264.5 NP_001255.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001264.5Link to Protein Sequence:NP_001255.4Re-query CCDS DB by Nucleotide ID:NM_001264Re-query CCDS DB by Protein ID:NP_001255Link to BLAST:NP_001255.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001255.4 529 Q15517 529 100% 0 0

Chromosomal Locations for CCDS 34389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31116025 31117529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31120335 31120419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGGCTCGTCTCGGGCACCCTGGATGGGGCGTGTGGGTGGGCACGGGATGATGGCACTGCTGCTGGCTG
GTCTCCTCCTGCCAGGGACCTTGGCTAAGAGCATTGGCACCTTCTCAGACCCTTGTAAGGACCCCACGCG
TATCACCTCCCCTAACGACCCCTGCCTCACTGGGAAGGGTGACTCCAGCGGTTTCAGTAGCTACAGTGGC
TCCAGCAGTTCTGGCAGCTCCATTTCCAGTGCCAGAAGCTCTGGTGGTGGCTCCAGTGGTAGCTCCAGCG
GATCCAGCATTGCCCAGGGTGGTTCTGCAGGATCTTTTAAGCCAGGAACGGGGTATTCCCAGGTCAGCTA
CTCCTCCGGATCTGGCTCTAGTCTACAAGGTGCATCCGGTTCCTCCCAGCTGGGGAGCAGCAGCTCTCAC
TCGGGAAACAGCGGCTCTCACTCGGGAAGCAGCAGCTCTCATTCGAGCAGCAGCAGCAGCTTTCAGTTCA
GCAGCAGCAGCTTCCAAGTAGGGAATGGCTCTGCTCTGCCAACCAATGACAACTCTTACCGCGGAATACT
AAACCCTTCCCAGCCTGGACAAAGCTCTTCCTCTTCCCAGACCTTTGGGGTATCCAGCAGTGGCCAAAGC
GTCAGCTCCAACCAGCGTCCCTGTAGTTCGGACATCCCCGACTCTCCCTGCAGTGGAGGGCCCATCGTCT
CGCACTCCGGCCCCTACATCCCCAGCTCCCACTCTGTGTCAGGGGGTCAGAGGCCTGTGGTGGTGGTGGT
GGACCAGCACGGTTCTGGTGCCCCTGGAGTGGTTCAAGGTCCCCCCTGTAGCAATGGTGGCCTTCCAGGC
AAGCCCTGTCCCCCAATCACCTCTGTAGACAAATCCTATGGTGGCTACGAGGTGGTGGGTGGCTCCTCTG
ACAGTTATCTGGTTCCAGGCATGACCTACAGTAAGGGTAAAATCTACCCTGTGGGCTACTTCACCAAAGA
GAACCCTGTGAAAGGCTCTCCAGGGGTCCCTTCCTTTGCAGCTGGGCCCCCCATCTCTGAGGGCAAATAC
TTCTCCAGCAACCCCATCATCCCCAGCCAGTCGGCAGCTTCCTCGGCCATTGCATTCCAGCCAGTGGGGA
CTGGTGGGGTCCAGCTCTGTGGAGGCGGCTCCACGGGCTCCAAGGGACCCTGCTCTCCCTCCAGTTCTCG
AGTCCCCAGCAGTTCTAGCATTTCCAGCAGCTCCGGTTTACCCTACCATCCCTGCGGCAGTGCTTCCCAG
AGCCCCTGCTCCCCACCAGGCACCGGCTCCTTCAGCAGCAGCTCCAGTTCCCAATCCAGTGGCAAAATCA
TCCTTCAGCCTTGTGGCAGCAAGTCCAGCTCTTCTGGTCACCCTTGCATGTCTGTCTCCTCCTTGACACT
GACTGGGGGCCCCGATGGCTCTCCCCATCCTGATCCCTCCGCTGGTGCCAAGCCCTGTGGCTCCAGCAGT
GCTGGAAAGATCCCCTGCCGCTCCATCCGGGATATCCTAGCCCAAGTGAAGCCTCTGGGGCCCCAGCTAG
CTGACCCTGAAGTTTTCCTACCCCAAGGAGAGTTACTCAACAGTCCATAA

Translation (529 aa):
MGSSRAPWMGRVGGHGMMALLLAGLLLPGTLAKSIGTFSDPCKDPTRITSPNDPCLTGKGDSSGFSSYSG
SSSSGSSISSARSSGGGSSGSSSGSSIAQGGSAGSFKPGTGYSQVSYSSGSGSSLQGASGSSQLGSSSSH
SGNSGSHSGSSSSHSSSSSSFQFSSSSFQVGNGSALPTNDNSYRGILNPSQPGQSSSSSQTFGVSSSGQS
VSSNQRPCSSDIPDSPCSGGPIVSHSGPYIPSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPG
KPCPPITSVDKSYGGYEVVGGSSDSYLVPGMTYSKGKIYPVGYFTKENPVKGSPGVPSFAAGPPISEGKY
FSSNPIIPSQSAASSAIAFQPVGTGGVQLCGGGSTGSKGPCSPSSSRVPSSSSISSSSGLPYHPCGSASQ
SPCSPPGTGSFSSSSSSQSSGKIILQPCGSKSSSSGHPCMSVSSLTLTGGPDGSPHPDPSAGAKPCGSSS
AGKIPCRSIRDILAQVKPLGPQLADPEVFLPQGELLNSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH