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Report for CCDS34293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34293.1 Public Homo sapiens 5 CREBRF 24 110 108 CCDS HistoryNCBI Gene:153222Re-query CCDS DB by CCDS ID:34293.1Re-query CCDS DB by GeneID:153222See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296953.6 ENSP00000296953.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296953.6Link to Ensembl Protein Viewer:ENSP00000296953.2Re-query CCDS DB by Nucleotide ID:ENST00000296953Re-query CCDS DB by Protein ID:ENSP00000296953
Original member Current member NCBI NM_153607.3 NP_705835.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153607.3Link to Protein Sequence:NP_705835.2Re-query CCDS DB by Nucleotide ID:NM_153607Re-query CCDS DB by Protein ID:NP_705835Link to BLAST:NP_705835.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705835.2 639 Q8IUR6-1 639 100% 0 0

Chromosomal Locations for CCDS 34293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 173080776 173080784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173086501 173086626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173090315 173091401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173108624 173108818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173110522 173110711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173112306 173112379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173123080 173123202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173133630 173133745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGCCTCAGCCTAGTGTAAGCGGAATGGATCCGCCTTTCGGGGATGCCTTTCGAAGCCACACCTTTTCGG
AACAAACTCTGATGAGCACAGATCTCTTAGCAAACAGTTCGGATCCAGATTTCATGTATGAACTGGATAG
AGAGATGAACTACCAACAGAATCCTAGAGACAACTTTCTTTCTTTGGAGGACTGCAAAGACATTGAAAAT
CTGGAGTCTTTCACAGATGTCCTGGATAATGAGGGTGCTTTAACCTCAAACTGGGAACAGTGGGATACAT
ACTGTGAAGACCTAACGAAATATACCAAACTAACCAGCTGTGACATCTGGGGAACAAAAGAAGTGGATTA
CTTGGGTCTTGATGACTTTTCTAGTCCTTACCAAGATGAAGAGGTTATAAGTAAAACTCCAACTTTAGCT
CAACTTAATAGTGAGGACTCACAGTCTGTTTCTGATTCCCTTTATTACCCCGATTCACTTTTCAGTGTCA
AACAAAATCCCTTACCCTCTTCATTCCCTGGTAAAAAGATCACAAGCAGAGCAGCTGCTCCTGTGTGTTC
TTCTAAGACTCTGCAGGCTGAGGTCCCTTTGTCAGACTGTGTCCAAAAAGCAAGTAAACCCACTTCAAGC
ACACAAATCATGGTGAAGACCAACATGTATCATAATGAAAAGGTGAACTTTCATGTTGAATGTAAAGACT
ATGTAAAAAAGGCAAAGGTAAAGATCAACCCAGTGCAACAGAGCCGGCCCTTGTTGAGCCAGATTCACAC
AGATGCAGCAAAGGAGAACACCTGCTACTGTGGTGCAGTGGCAAAGAGACAAGAGAAAAAAGGGATGGAG
CCTCTTCAAGGTCATGCCACTCCCGCTTTGCCTTTTAAAGAAACCCAGGAACTATTACTAAGTCCCCTGC
CCCAGGAAGGTCCTGGGTCACTTGCAGCAGGAGAGAGCAGCAGTCTTTCTGCCAGTACATCAGTCTCAGA
TTCATCCCAGAAAAAAGAAGAGCACAATTATTCTCTTTTTGTCTCCGACAACTTGGGTGAACAGCCAACT
AAATGCAGTCCTGAAGAAGATGAGGAGGACGAGGAGGATGTTGATGATGAGGACCATGATGAAGGATTCG
GCAGTGAGCATGAACTGTCTGAAAATGAGGAGGAGGAAGAAGAGGAAGAGGATTATGAAGATGACAAGGA
TGATGATATTAGTGATACTTTCTCTGAACCAGGCTATGAAAATGATTCTGTAGAAGACCTGAAGGAGGTG
ACTTCAATATCTTCACGGAAGAGAGGTAAAAGAAGATACTTCTGGGAGTATAGTGAACAACTTACACCAT
CACAGCAAGAGAGGATGCTGAGACCATCTGAGTGGAACCGAGATACTTTGCCAAGTAATATGTATCAGAA
AAATGGCTTACATCATGGAAAATATGCAGTAAAGAAGTCACGGAGAACTGATGTAGAAGACCTGACTCCA
AATCCTAAAAAACTCCTCCAGATAGGCAATGAACTTCGGAAACTGAATAAGGTGATTAGTGACCTGACTC
CAGTCAGTGAGCTTCCCTTAACAGCCCGACCAAGGTCAAGGAAGGAAAAAAATAAGCTGGCTTCCAGAGC
TTGTCGGTTAAAGAAGAAAGCCCAGTATGAAGCTAATAAAGTGAAATTATGGGGCCTCAACACAGAATAT
GATAATTTATTGTTTGTAATCAACTCCATCAAGCAAGAGATTGTAAACCGGGTACAGAATCCAAGAGATG
AGAGAGGACCCAACATGGGGCAGAAGCTTGAAATCCTCATTAAAGATACTCTCGGTCTACCAGTTGCTGG
GCAAACCTCAGAATTTGTTAACCAAGTGTTAGAGAAGACTGCAGAAGGGAATCCCACTGGAGGCCTTGTA
GGATTAAGGATACCAACATCAAAGGTGTAA

Translation (639 aa):
MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIEN
LESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLA
QLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSS
TQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGME
PLQGHATPALPFKETQELLLSPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPT
KCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEV
TSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTP
NPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEY
DNLLFVINSIKQEIVNRVQNPRDERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLV
GLRIPTSKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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