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Report for CCDS34291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34291.1 Public Homo sapiens 5 SH3PXD2B 24 110 108 CCDS HistoryNCBI Gene:285590Re-query CCDS DB by CCDS ID:34291.1Re-query CCDS DB by GeneID:285590See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311601.6 ENSP00000309714.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311601.6Link to Ensembl Protein Viewer:ENSP00000309714.5Re-query CCDS DB by Nucleotide ID:ENST00000311601Re-query CCDS DB by Protein ID:ENSP00000309714
Original member Current member NCBI NM_001017995.3 NP_001017995.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017995.3Link to Protein Sequence:NP_001017995.1Re-query CCDS DB by Nucleotide ID:NM_001017995Re-query CCDS DB by Protein ID:NP_001017995Link to BLAST:NP_001017995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017995.1 911 A1X283 911 100% 0 0

Chromosomal Locations for CCDS 34291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 172338369 172339916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172346136 172346261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172347283 172347332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172350363 172350589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172353888 172354005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172358773 172358877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172362735 172362869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172373790 172373815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172382036 172382127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172394563 172394639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172406277 172406352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172422416 172422496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172454278 172454352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGCCGCCGCGGCGCAGCATCGTGGAGGTGAAGGTGCTAGACGTGCAGAAGCGGCGGGTGCCCAACAAGC
ATTATGTCTACATCATCCGGGTCACGTGGTCCAGCGGCTCCACCGAGGCCATTTACCGGCGCTACAGCAA
GTTTTTTGACCTCCAGATGCAGATGTTGGACAAATTTCCCATGGAAGGAGGACAGAAGGACCCCAAGCAG
CGGATCATCCCCTTTCTGCCAGGTAAGATTCTCTTCAGACGAAGCCACATCCGGGACGTGGCTGTCAAAC
GCCTGATACCAATTGATGAATACTGTAAGGCCCTCATCCAGCTGCCCCCCTACATCTCTCAGTGTGATGA
GGTGCTGCAGTTCTTTGAGACAAGACCTGAGGACCTGAATCCCCCCAAAGAGGAGCACATTGGGAAAAAG
AAATCTGGGGGTGACCAAACCTCAGTGGACCCCATGGTCCTGGAGCAGTATGTGGTGGTAGCCAACTACC
AGAAGCAGGAGAGTTCGGAGATCAGCCTCAGCGTGGGGCAGGTGGTGGACATCATCGAGAAGAATGAGTC
AGGTTGGTGGTTCGTCAGCACTGCCGAGGAGCAAGGCTGGGTCCCTGCAACGTGCCTCGAAGGCCAGGAT
GGGGTGCAGGATGAGTTTTCTCTGCAGCCTGAAGAAGAGGAGAAGTACACAGTCATCTACCCGTACACAG
CTCGGGACCAGGATGAAATGAACCTGGAGAGAGGGGCTGTGGTGGAGGTCATCCAGAAAAACCTGGAAGG
CTGGTGGAAGATCAGGTACCAGGGCAAAGAAGGCTGGGCCCCCGCCTCCTACCTAAAGAAGAACAGTGGG
GAGCCCTTGCCCCCGAAGCCAGGCCCTGGCTCACCCTCCCACCCGGGTGCCCTTGACTTGGATGGTGTTT
CCCGGCAGCAGAACGCGGTGGGCAGGGAGAAGGAGCTGCTCAGCAGCCAGAGGGACGGGCGGTTTGAAGG
CCGCCCGGTGCCCGACGGTGACGCCAAGCAGAGATCACCAAAGATGAGGCAGAGACCCCCTCCTCGCCGG
GACATGACCATTCCTCGAGGCCTCAACCTGCCGAAGCCGCCCATCCCGCCCCAAGTGGAGGAAGAGTATT
ACACCATCGCCGAATTCCAGACAACCATCCCAGACGGCATCAGCTTCCAGGCAGGCCTGAAGGTCGAGGT
GATCGAGAAAAACTTGAGTGGCTGGTGGTACATTCAGATTGAAGATAAGGAAGGGTGGGCCCCGGCCACC
TTCATTGACAAGTACAAGAAGACGAGCAACGCGTCGAGACCCAACTTTCTGGCTCCCCTGCCCCACGAGG
TGACCCAGCTCCGGCTGGGGGAAGCAGCAGCGCTGGAGAACAACACGGGCAGCGAAGCCACGGGCCCCTC
CCGGCCCCTGCCTGACGCACCGCATGGTGTCATGGACTCGGGGTTGCCATGGTCTAAAGACTGGAAGGGC
AGTAAGGATGTCCTGAGGAAGGCATCTTCAGACATGTCTGCGTCAGCAGGCTACGAGGAGATCTCAGACC
CCGACATGGAGGAGAAGCCCAGCCTCCCTCCGCGGAAAGAATCCATCATCAAGTCGGAGGGGGAGCTGCT
GGAGCGGGAGCGGGAGCGGCAGAGGACGGAGCAGCTCCGGGGCCCCACTCCCAAGCCTCCGGGCGTGATT
TTGCCGATGATGCCAGCCAAACACATCCCTCCAGCCCGGGACAGCAGGAGGCCAGAGCCCAAACCTGACA
AAAGCAGACTGTTCCAGCTGAAAAATGACATGGGGCTGGAGTGTGGCCACAAGGTCTTGGCCAAGGAAGT
GAAGAAGCCCAACCTCCGGCCCATCTCCAAATCCAAAACTGACCTGCCAGAGGAGAAGCCAGATGCCACT
CCCCAGAATCCCTTCTTGAAGTCCAGACCTCAGGTTAGGCCAAAACCAGCTCCTTCCCCCAAAACGGAGC
CACCTCAGGGCGAAGACCAAGTCGACATCTGCAACCTCAGGAGTAAGCTCAGGCCTGCCAAGTCCCAAGA
CAAGTCCTTGTTGGATGGGGAGGGCCCCCAGGCAGTAGGGGGCCAAGACGTGGCCTTCAGCCGAAGCTTC
CTCCCAGGAGAGGGGCCTGGCCGCGCCCAGGACAGGACGGGCAAACAGGATGGTCTCAGCCCAAAAGAGA
TTTCCTGCAGAGCCCCTCCGAGGCCAGCCAAGACCACAGATCCTGTGTCTAAGAGCGTGCCTGTTCCTCT
CCAAGAGGCTCCCCAGCAGAGACCTGTGGTCCCACCCCGCAGACCACCTCCCCCAAAGAAAACCTCTTCG
TCATCCAGGCCGCTCCCAGAGGTCAGAGGTCCACAGTGTGAAGGCCACGAAAGCAGGGCAGCTCCCACCC
CAGGCCGTGCTCTCCTCGTCCCTCCAAAAGCCAAACCTTTTCTCTCCAACTCTTTGGGGGGCCAGGATGA
CACGCGAGGCAAAGGCAGCCTGGGGCCATGGGGGACCGGCAAGATTGGAGAAAACAGGGAGAAAGCAGCT
GCAGCCTCTGTCCCCAATGCCGACGGCCTGAAGGACTCTTTGTATGTGGCCGTGGCCGACTTTGAAGGAG
ACAAAGACACCAGCAGCTTCCAGGAAGGGACAGTGTTTGAAGTCCGGGAGAAGAACAGCAGTGGCTGGTG
GTTCTGCCAGGTCCTGAGCGGAGCCCCTTCCTGGGAAGGGTGGATTCCTTCCAACTATCTCAGAAAGAAG
CCGTAG

Translation (911 aa):
MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQ
RIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKK
KSGGDQTSVDPMVLEQYVVVANYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQD
GVQDEFSLQPEEEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKKNSG
EPLPPKPGPGSPSHPGALDLDGVSRQQNAVGREKELLSSQRDGRFEGRPVPDGDAKQRSPKMRQRPPPRR
DMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPAT
FIDKYKKTSNASRPNFLAPLPHEVTQLRLGEAAALENNTGSEATGPSRPLPDAPHGVMDSGLPWSKDWKG
SKDVLRKASSDMSASAGYEEISDPDMEEKPSLPPRKESIIKSEGELLERERERQRTEQLRGPTPKPPGVI
LPMMPAKHIPPARDSRRPEPKPDKSRLFQLKNDMGLECGHKVLAKEVKKPNLRPISKSKTDLPEEKPDAT
PQNPFLKSRPQVRPKPAPSPKTEPPQGEDQVDICNLRSKLRPAKSQDKSLLDGEGPQAVGGQDVAFSRSF
LPGEGPGRAQDRTGKQDGLSPKEISCRAPPRPAKTTDPVSKSVPVPLQEAPQQRPVVPPRRPPPPKKTSS
SSRPLPEVRGPQCEGHESRAAPTPGRALLVPPKAKPFLSNSLGGQDDTRGKGSLGPWGTGKIGENREKAA
AASVPNADGLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWEGWIPSNYLRKK
P


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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