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Report for CCDS34227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34227.1 Public Homo sapiens 5 FNIP1 24 110 108 CCDS HistoryNCBI Gene:96459Re-query CCDS DB by CCDS ID:34227.1Re-query CCDS DB by GeneID:96459See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510461.6 ENSP00000421985.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000510461.6Link to Ensembl Protein Viewer:ENSP00000421985.1Re-query CCDS DB by Nucleotide ID:ENST00000510461Re-query CCDS DB by Protein ID:ENSP00000421985
Original member Current member NCBI NM_133372.3 NP_588613.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133372.3Link to Protein Sequence:NP_588613.3Re-query CCDS DB by Nucleotide ID:NM_133372Re-query CCDS DB by Protein ID:NP_588613Link to BLAST:NP_588613.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_588613.3 1166 Q8TF40-1 1166 100% 0 0

Chromosomal Locations for CCDS 34227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 131644685 131644763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131647090 131647205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131651802 131651999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131670463 131670631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131671505 131672924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131677703 131677872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131679029 131679175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131698917 131699002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131704065 131704266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131706411 131706546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131709201 131709272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131710578 131710661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131716565 131716656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131718986 131719060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131719317 131719417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131730904 131731038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131744564 131744690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131796830 131796921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGGCCCCTACGCTGTTCCAGAAGCTCTTCAGCAAGAGGACCGGGCTGGGCGCGCCCGGCCGCGACGCCC
GGGACCCAGATTGCGGGTTCAGTTGGCCTTTACCAGAGTTTGATCCAAGCCAGATTCGACTGATTGTATA
TCAAGACTGTGAAAGACGAGGGAGAAATGTTTTGTTTGACTCCAGTGTTAAGAGAAGAAATGAGGACATA
TCAGTATCGAAACTCGGCAGTGATGCTCAAGTTAAAGTCTTTGGGAAATGCTGCCAACTGAAACCTGGAG
GAGACAGTTCTTCCTCTTTAGATAGTTCTGTGACTTCATCTTCTGATATAAAAGACCAGTGTCTTAAGTA
CCAGGGTTCTCGGTGCTCTTCTGATGCCAATATGCTTGGAGAGATGATGTTTGGCTCAGTAGCAATGAGC
TACAAAGGATCCACCTTAAAAATTCATCAGATTCGTTCCCCTCCACAGCTCATGCTCAGCAAAGTGTTTA
CTGCTCGGACTGGCAGCAGTATTTGTGGGAGTCTCAATACGCTACAAGATAGTCTTGAATTCATCAATCA
GGACAACAATACATTAAAGGCTGATAATAACACAGTTATTAATGGACTGCTTGGAAATATAGGTCTTTCA
CAGTTCTGCAGCCCCAGGCGGGCATTCTCTGAGCAGGGTCCGCTCCGCCTGATCAGGAGCGCCTCTTTCT
TTGCAGTTCACAGCAACCCAATGGACATGCCTGGAAGAGAGCTCAATGAGGACAGAGACAGTGGCATAGC
ACGGTCTGCATCTCTCAGCAGCTTGCTGATCACTCCATTTCCTTCCCCAAACTCCTCACTTACCCGAAGT
TGTGCCAGCAGCTACCAGCGACGTTGGCGACGCAGCCAAACAACAAGTTTGGAAAATGGGGTATTTCCTA
GATGGTCTATAGAAGAAAGCTTTAATCTCTCAGATGAAAGCTGTGGCCCTAACCCAGGAATTGTGCGGAA
AAAGAAGATTGCAATTGGGGTAATCTTTTCATTGTCCAAAGATGAAGATGAAAATAACAAATTTAATGAA
TTCTTTTTTTCACATTTTCCTCTCTTTGAAAGCCACATGAACAAATTAAAGAGTGCAATAGAACAGGCTA
TGAAAATGAGCCGGAGATCAGCTGATGCCAGTCAGAGAAGTTTGGCATATAATCGAATAGTTGATGCCCT
AAATGAATTCAGAACAACAATTTGTAATCTTTACACGATGCCACGAATTGGAGAACCTGTCTGGCTTACA
ATGATGTCGGGGACTCCAGAAAAGAACCACCTTTGCTATCGTTTCATGAAGGAGTTCACCTTTCTAATGG
AAAATGCTTCCAAAAATCAATTCTTGCCAGCTCTCATTACTGCAGTTCTGACCAATCATCTTGCCTGGGT
TCCAACAGTCATGCCAAATGGACAACCACCTATAAAAATATTTTTAGAAAAGCATTCCTCTCAGAGTGTG
GACATGTTGGCAAAGACTCATCCATATAACCCACTTTGGGCACAACTGGGAGACTTGTATGGCGCTATTG
GCTCTCCCGTACGGTTAGCAAGGACTGTGGTAGTTGGCAAACGACAAGACATGGTCCAGAGGCTACTTTA
TTTTCTTACTTATTTTATAAGATGCTCTGAACTTCAAGAAACGCATCTTTTAGAAAATGGAGAAGATGAA
GCCATCGTTATGCCAGGCACAGTAATTACTACCACTTTAGAGAAAGGTGAAATAGAAGAATCAGAGTATG
TCCTTGTCACAATGCATAGAAACAAAAGCAGTTTGCTCTTTAAAGAGTCAGAAGAAATTAGAACTCCCAA
TTGTAACTGTAAATATTGCAGTCATCCACTCCTTGGGCAAAATGTAGAGAACATTTCACAACAAGAGAGA
GAAGATATTCAAAACAGCTCTAAGGAGCTGCTAGGAATTTCAGATGAGTGCCAGATGATTTCTCCTTCTG
ACTGCCAAGAAGAAAATGCTGTTGATGTTAAACAGTACAGAGATAAATTAAGAACTTGCTTTGACGCCAA
GTTAGAGACAGTTGTTTGCACAGGATCTGTTCCAGTAGACAAATGTGCATTGTCAGAGTCAGGCTTAGAG
TCAACAGAGGAAACATGGCAGAGTGAGAAGTTGCTGGATTCAGACAGTCACACAGGCAAAGCAATGAGAT
CCACAGGAATGGTTGTGGAAAAAAAACCTCCAGATAAGATTGTGCCTGCTTCATTTTCTTGTGAGGCTGC
CCAGACAAAGGTTACTTTCCTGATTGGGGATTCTATGTCACCTGATTCAGATACTGAGCTTCGAAGTCAG
GCAGTGGTGGATCAGATTACCAGACATCACACCAAACCATTGAAGGAAGAAAGAGGGGCTATTGATCAGC
ATCAAGAAACTAAACAAACAACCAAGGACCAATCTGGAGAGTCTGATACACAGAACATGGTTTCTGAAGA
GCCCTGTGAACTTCCCTGTTGGAATCATTCAGACCCAGAAAGCATGAGCTTATTCGACGAATATTTTAAT
GATGATTCAATCGAAACCAGGACTATTGATGATGTTCCATTTAAAACAAGTACAGATAGTAAAGACCATT
GCTGTATGTTAGAGTTTTCAAAAATATTGTGTACAAAAAATAACAAGCAGAACAATGAATTTTGTAAATG
TATAGAAACAGTTCCCCAAGATTCATGTAAAACCTGCTTTCCTCAGCAGGACCAAAGAGATACACTCTCC
ATTCTTGTCCCCCATGGGGATAAAGAGAGTTCAGATAAAAAAATTGCTGTAGGAACTGAATGGGACATTC
CAAGAAATGAAAGTTCAGACAGTGCCCTTGGGGATAGTGAAAGTGAAGATACAGGTCATGATATGACTAG
ACAAGTTAGCAGTTATTATGGAGGAGAGCAAGAAGATTGGGCAGAAGAGGATGAGATACCTTTTCCTGGG
TCAAAGTTAATCGAAGTGAGTGCTGTTCAGCCCAACATTGCCAACTTCGGGAGGTCCTTGCTGGGTGGCT
ACTGCTCATCTTATGTGCCTGACTTTGTTCTTCAAGGAATTGGGAGTGATGAGAGGTTCCGTCAGTGTCT
GATGTCAGATTTATCTCATGCTGTGCAGCATCCAGTTTTGGATGAACCAATAGCAGAAGCTGTCTGTATT
ATAGCTGACATGGATAAATGGACTGTTCAAGTGGCCAGTAGCCAGAGACGAGTGACAGATAATAAATTGG
GAAAGGAAGTATTGGTTTCCAGTCTTGTTTCCAATCTGCTTCATTCCACACTTCAGCTTTATAAGCATAA
CTTGTCTCCAAATTTTTGTGTAATGCATCTTGAAGACCGGTTGCAGGAGCTATACTTCAAAAGTAAAATG
CTGTCTGAATACCTGAGGGGGCAGATGCGTGTTCATGTCAAGGAGCTGGGAGTGGTTCTGGGGATTGAAT
CCAGTGATCTTCCACTTCTGGCTGCTGTAGCAAGCACTCACTCTCCATATGTTGCACAAATACTCCTTTA
A

Translation (1166 aa):
MAPTLFQKLFSKRTGLGAPGRDARDPDCGFSWPLPEFDPSQIRLIVYQDCERRGRNVLFDSSVKRRNEDI
SVSKLGSDAQVKVFGKCCQLKPGGDSSSSLDSSVTSSSDIKDQCLKYQGSRCSSDANMLGEMMFGSVAMS
YKGSTLKIHQIRSPPQLMLSKVFTARTGSSICGSLNTLQDSLEFINQDNNTLKADNNTVINGLLGNIGLS
QFCSPRRAFSEQGPLRLIRSASFFAVHSNPMDMPGRELNEDRDSGIARSASLSSLLITPFPSPNSSLTRS
CASSYQRRWRRSQTTSLENGVFPRWSIEESFNLSDESCGPNPGIVRKKKIAIGVIFSLSKDEDENNKFNE
FFFSHFPLFESHMNKLKSAIEQAMKMSRRSADASQRSLAYNRIVDALNEFRTTICNLYTMPRIGEPVWLT
MMSGTPEKNHLCYRFMKEFTFLMENASKNQFLPALITAVLTNHLAWVPTVMPNGQPPIKIFLEKHSSQSV
DMLAKTHPYNPLWAQLGDLYGAIGSPVRLARTVVVGKRQDMVQRLLYFLTYFIRCSELQETHLLENGEDE
AIVMPGTVITTTLEKGEIEESEYVLVTMHRNKSSLLFKESEEIRTPNCNCKYCSHPLLGQNVENISQQER
EDIQNSSKELLGISDECQMISPSDCQEENAVDVKQYRDKLRTCFDAKLETVVCTGSVPVDKCALSESGLE
STEETWQSEKLLDSDSHTGKAMRSTGMVVEKKPPDKIVPASFSCEAAQTKVTFLIGDSMSPDSDTELRSQ
AVVDQITRHHTKPLKEERGAIDQHQETKQTTKDQSGESDTQNMVSEEPCELPCWNHSDPESMSLFDEYFN
DDSIETRTIDDVPFKTSTDSKDHCCMLEFSKILCTKNNKQNNEFCKCIETVPQDSCKTCFPQQDQRDTLS
ILVPHGDKESSDKKIAVGTEWDIPRNESSDSALGDSESEDTGHDMTRQVSSYYGGEQEDWAEEDEIPFPG
SKLIEVSAVQPNIANFGRSLLGGYCSSYVPDFVLQGIGSDERFRQCLMSDLSHAVQHPVLDEPIAEAVCI
IADMDKWTVQVASSQRRVTDNKLGKEVLVSSLVSNLLHSTLQLYKHNLSPNFCVMHLEDRLQELYFKSKM
LSEYLRGQMRVHVKELGVVLGIESSDLPLLAAVASTHSPYVAQILL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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