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Report for CCDS34224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34224.1 Public Homo sapiens 5 CDC42SE2 24 110 108 CCDS HistoryNCBI Gene:56990Re-query CCDS DB by CCDS ID:34224.1Re-query CCDS DB by GeneID:56990See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360515.7 ENSP00000353706.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360515.7Link to Ensembl Protein Viewer:ENSP00000353706.3Re-query CCDS DB by Nucleotide ID:ENST00000360515Re-query CCDS DB by Protein ID:ENSP00000353706
Original member Current member EBI ENST00000395246.5 ENSP00000378667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395246.5Link to Ensembl Protein Viewer:ENSP00000378667.1Re-query CCDS DB by Nucleotide ID:ENST00000395246Re-query CCDS DB by Protein ID:ENSP00000378667
Original member Current member EBI ENST00000505065.2 ENSP00000427421.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505065.2Link to Ensembl Protein Viewer:ENSP00000427421.1Re-query CCDS DB by Nucleotide ID:ENST00000505065Re-query CCDS DB by Protein ID:ENSP00000427421
Original member Current member NCBI NM_001038702.2 NP_001033791.1 Accepted alive Link to Nucleotide Sequence:NM_001038702.2Link to Protein Sequence:NP_001033791.1Re-query CCDS DB by Nucleotide ID:NM_001038702Re-query CCDS DB by Protein ID:NP_001033791Link to BLAST:NP_001033791.1
Original member Current member NCBI NM_001375633.1 NP_001362562.1 Accepted alive Link to Nucleotide Sequence:NM_001375633.1Link to Protein Sequence:NP_001362562.1Re-query CCDS DB by Nucleotide ID:NM_001375633Re-query CCDS DB by Protein ID:NP_001362562Link to BLAST:NP_001362562.1
Original member Current member NCBI NM_001375634.1 NP_001362563.1 Accepted alive Link to Nucleotide Sequence:NM_001375634.1Link to Protein Sequence:NP_001362563.1Re-query CCDS DB by Nucleotide ID:NM_001375634Re-query CCDS DB by Protein ID:NP_001362563Link to BLAST:NP_001362563.1
Original member Current member NCBI NM_001375635.1 NP_001362564.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375635.1Link to Protein Sequence:NP_001362564.1Re-query CCDS DB by Nucleotide ID:NM_001375635Re-query CCDS DB by Protein ID:NP_001362564Link to BLAST:NP_001362564.1
Original member Current member NCBI NM_020240.3 NP_064625.1 Accepted alive Link to Nucleotide Sequence:NM_020240.3Link to Protein Sequence:NP_064625.1Re-query CCDS DB by Nucleotide ID:NM_020240Re-query CCDS DB by Protein ID:NP_064625Link to BLAST:NP_064625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033791.1 84 Q9NRR3 84 100% 0 0
NP_001362562.1 84 Q9NRR3 84 100% 0 0
NP_001362563.1 84 Q9NRR3 84 100% 0 0
NP_001362564.1 84 Q9NRR3 84 100% 0 0
NP_064625.1 84 Q9NRR3 84 100% 0 0

Chromosomal Locations for CCDS 34224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 131359494 131359547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131385543 131385644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 131390993 131391091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGAGTGAATTCTGGTTGTGTTTCAACTGCTGTATTGCAGAACAGCCTCAGCCTAAAAGGCGACGGCGGA
TTGACAGAAGTATGATTGGAGAGCCCACAAACTTTGTGCATACAGCTCATGTTGGATCAGGAGACCTGTT
CAGTGGAATGAATTCAGTTAGCTCCATTCAGAACCAAATGCAGTCCAAGGGAGGTTATGGAGGTGGAATG
CCTGCCAATGTCCAGATGCAGCTCGTGGATACGAAGGCGGGATAG

Translation (84 aa):
MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQMQSKGGYGGGM
PANVQMQLVDTKAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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