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Report for CCDS34213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34213.1 Public Homo sapiens 5 CCDC112 24 110 108 CCDS HistoryNCBI Gene:153733Re-query CCDS DB by CCDS ID:34213.1Re-query CCDS DB by GeneID:153733See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379611.10 ENSP00000368931.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379611.10Link to Ensembl Protein Viewer:ENSP00000368931.5Re-query CCDS DB by Nucleotide ID:ENST00000379611Re-query CCDS DB by Protein ID:ENSP00000368931
Original member Current member NCBI NM_001040440.3 NP_001035530.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040440.3Link to Protein Sequence:NP_001035530.1Re-query CCDS DB by Nucleotide ID:NM_001040440Re-query CCDS DB by Protein ID:NP_001035530Link to BLAST:NP_001035530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035530.1 529 Q8NEF3-2 529 100% 0 0

Chromosomal Locations for CCDS 34213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115267876 115267918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115268882 115269000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115269703 115269798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115271213 115271626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115275216 115275606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115275994 115276069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115276965 115277054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115279647 115279768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115284787 115284908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115296427 115296543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGCCGCACTGACGACGGTTGTGGTAGCGGCTGCGGCCACCGCGGTAGCCGGGGCTGTGGCAGGGGCGG
GCGCGGCCACCGGGACCGGCGTGGGAGCGACGCCAGCGCCTCAACAGAGTGATGGCTGTTTTAGTACTTC
AGGTGGAATTCGTCCTTTTCATCTTCAGAACTGGAAGCAGAAAGTTAATCAGACTAAGAAAGCAGAATTT
GTACGCACAGCAGAAAAATTTAAAAATCAAGTAATTAACATGGAAAAAGATAAACACAGTCATTTCTACA
ACCAAAAAAGTGACTTCAGAATTGAGCATAGTATGCTAGAAGAATTGGAAAATAAATTGATTCACAGCAG
GAAAACAGAAAGAGCAAAAATCCAGCAACAATTGGCCAAAATACATAATAATGTAAAGAAACTTCAGCAT
CAATTAAAAGATGTGAAGCCTACACCTGATTTTGTTGAGAAGCTCAGAGAAATGATGGAAGAAATTGAAA
ATGCAATTAACACTTTTAAAGAAGAGCAGAGGTTGATATATGAAGAGCTAATTAAAGAAGAGAAGACAAC
TAATAATGAGTTGAGTGCCATATCAAGAAAAATTGACACATGGGCTTTGGGTAATTCAGAAACAGAGAAA
GCTTTCAGAGCAATCTCAAGCAAAGTTCCTGTAGACAAAGTAACACCAAGTACTCTTCCAGAAGAGGTAC
TAGATTTTGAAAAATTCCTTCAGCAAACAGGAGGGCGACAAGGTGCCTGGGATGATTATGATCACCAGAA
CTTTGTAAAGGTGAGAAACAAACATAAAGGGAAGCCAACATTTATGGAAGAAGTTCTAGAACACCTTCCT
GGAAAAACACAAGATGAAGTTCAACAGCATGAAAAATGGTATCAAAAGTTTCTGGCTCTAGAAGAAAGAA
AAAAAGAGTCAATTCAGATTTGGAAAACTAAAAAGCAGCAAAAAAGGGAGGAAATTTTCAAGTTAAAGGA
AAAGGCAGACAACACACCTGTGCTTTTTCATAATAAACAAGAGGATAATCAAAAGCAAAAAGAGGAACAA
AGAAAGAAACAGAAATTGGCAGTTGAAGCTTGGAAGAAACAGAAAAGTATAGAAATGTCAATGAAATGTG
CTTCCCAGTTAAAAGAAGAAGAAGAGAAAGAGAAAAAACATCAGAAAGAACGCCAGCGCCAGTTTAAGTT
AAAATTACTACTAGAAAGTTATACCCAGCAGAAGAAAGAACAGGAAGAATTTTTGAGGCTTGAAAAGGAG
ATAAGGGAAAAGGCAGAAAAGGCAGAAAAAAGGAAAAATGCTGCTGATGAAATTTCCAGATTTCAAGAAA
GAGATTTACATAAACTTGAACTGAAAATTCTAGATAGACAGGCAAAGGAAGATGAAAAGTCACAAAAACA
AAGAAGACTGGCAAAATTAAAAGAAAAGGTTGAAAACAATGTTAGTAGAGATCCCTCTAGGCTTTACAAA
CCCACCAAAGGTTGGGAAGAACGAACCAAAAAGATAGGACCAACAGGCTCTGGGCCACTTCTACATATCC
CACATAGGGCTATTCCAACCTGGAGACAAGGAATACAGAGAAGAGTATGA

Translation (529 aa):
MAALTTVVVAAAATAVAGAVAGAGAATGTGVGATPAPQQSDGCFSTSGGIRPFHLQNWKQKVNQTKKAEF
VRTAEKFKNQVINMEKDKHSHFYNQKSDFRIEHSMLEELENKLIHSRKTERAKIQQQLAKIHNNVKKLQH
QLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIKEEKTTNNELSAISRKIDTWALGNSETEK
AFRAISSKVPVDKVTPSTLPEEVLDFEKFLQQTGGRQGAWDDYDHQNFVKVRNKHKGKPTFMEEVLEHLP
GKTQDEVQQHEKWYQKFLALEERKKESIQIWKTKKQQKREEIFKLKEKADNTPVLFHNKQEDNQKQKEEQ
RKKQKLAVEAWKKQKSIEMSMKCASQLKEEEEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKE
IREKAEKAEKRKNAADEISRFQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVENNVSRDPSRLYK
PTKGWEERTKKIGPTGSGPLLHIPHRAIPTWRQGIQRRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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