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Report for CCDS34198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34198.1 Public Homo sapiens 5 TMEM167A 24 110 108 CCDS HistoryNCBI Gene:153339Re-query CCDS DB by CCDS ID:34198.1Re-query CCDS DB by GeneID:153339See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34198.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502346.2 ENSP00000424707.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502346.2Link to Ensembl Protein Viewer:ENSP00000424707.1Re-query CCDS DB by Nucleotide ID:ENST00000502346Re-query CCDS DB by Protein ID:ENSP00000424707
Original member Current member NCBI NM_174909.5 NP_777569.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174909.5Link to Protein Sequence:NP_777569.1Re-query CCDS DB by Nucleotide ID:NM_174909Re-query CCDS DB by Protein ID:NP_777569Link to BLAST:NP_777569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777569.1 72 Q8TBQ9 72 100% 0 0

Chromosomal Locations for CCDS 34198.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 83057084 83057154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83061877 83061911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83065008 83065117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83077321 83077323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (219 nt):
ATGTCTGCCATTTTCAATTTTCAGAGTCTATTGACTGTAATCTTGCTGCTTATATGTACCTGTGCTTATA
TTCGATCCTTGGCACCCAGCCTCCTGGACAGAAATAAAACTGGATTGTTGGGTATATTTTGGAAGTGTGC
CAGAATTGGTGAACGGAAGAGTCCTTATGTTGCAGTATGCTGTATAGTAATGGCCTTCAGCATCCTCTTC
ATACAGTAG

Translation (72 aa):
MSAIFNFQSLLTVILLLICTCAYIRSLAPSLLDRNKTGLLGIFWKCARIGERKSPYVAVCCIVMAFSILF
IQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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