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Report for CCDS3414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3414.1 Public Homo sapiens 4 C1QTNF7 24 110 108 CCDS HistoryNCBI Gene:114905Re-query CCDS DB by CCDS ID:3414.1Re-query CCDS DB by GeneID:114905See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444304.3 ENSP00000388914.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444304.3Link to Ensembl Protein Viewer:ENSP00000388914.2Re-query CCDS DB by Nucleotide ID:ENST00000444304Re-query CCDS DB by Protein ID:ENSP00000388914
Original member Current member EBI ENST00000429690.5 ENSP00000410722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429690.5Link to Ensembl Protein Viewer:ENSP00000410722.1Re-query CCDS DB by Nucleotide ID:ENST00000429690Re-query CCDS DB by Protein ID:ENSP00000410722
Original member Current member NCBI NM_001135171.2 NP_001128643.1 Accepted alive Link to Nucleotide Sequence:NM_001135171.2Link to Protein Sequence:NP_001128643.1Re-query CCDS DB by Nucleotide ID:NM_001135171Re-query CCDS DB by Protein ID:NP_001128643Link to BLAST:NP_001128643.1
Original member Current member NCBI NM_031911.5 NP_114117.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031911.5Link to Protein Sequence:NP_114117.1Re-query CCDS DB by Nucleotide ID:NM_031911Re-query CCDS DB by Protein ID:NP_114117Link to BLAST:NP_114117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128643.1 289 Q9BXJ2-1 289 100% 0 0
NP_114117.1 289 Q9BXJ2-1 289 100% 0 0

Chromosomal Locations for CCDS 3414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15435744 15435981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15442168 15442799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGTTTGTCTTGCTCTATGTTACAAGTTTTGCCATTTGTGCCAGTGGACAACCCCGGGGTAATCAGTTGA
AAGGAGAGAACTACTCCCCCAGGTATATCTGCAGCATTCCTGGCTTGCCTGGACCTCCAGGGCCCCCTGG
AGCAAATGGTTCCCCTGGGCCCCATGGTCGCATCGGCCTTCCAGGAAGAGATGGTAGAGACGGCAGGAAA
GGAGAGAAAGGTGAAAAGGGAACTGCAGGTTTGAGAGGTAAGACTGGACCGCTAGGTCTTGCCGGTGAGA
AAGGGGACCAAGGAGAGACTGGGAAGAAAGGACCCATAGGACCAGAGGGAGAGAAAGGAGAAGTAGGTCC
AATTGGTCCTCCTGGACCAAAGGGAGACAGAGGAGAACAAGGGGACCCGGGGCTGCCTGGAGTTTGCAGA
TGTGGAAGCATCGTGCTCAAATCCGCCTTTTCTGTTGGCATCACAACCAGCTACCCAGAAGAAAGACTAC
CTATTATATTTAACAAGGTCCTCTTCAACGAGGGAGAGCACTACAACCCTGCCACAGGGAAGTTCATCTG
TGCTTTCCCAGGGATCTATTACTTTTCTTATGATATCACATTGGCTAATAAGCATCTGGCAATCGGACTG
GTACACAATGGGCAATACCGGATAAAGACCTTCGACGCCAACACAGGAAACCATGATGTGGCTTCGGGGT
CCACAGTCATCTATCTGCAGCCAGAAGATGAAGTCTGGCTGGAGATTTTCTTCACAGACCAGAATGGCCT
CTTCTCAGACCCAGGTTGGGCAGACAGCTTATTCTCCGGGTTTCTCTTATACGTTGACACAGATTACCTA
GATTCCATATCAGAAGATGATGAATTGTGA

Translation (289 aa):
MFVLLYVTSFAICASGQPRGNQLKGENYSPRYICSIPGLPGPPGPPGANGSPGPHGRIGLPGRDGRDGRK
GEKGEKGTAGLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDPGLPGVCR
CGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKHLAIGL
VHNGQYRIKTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQNGLFSDPGWADSLFSGFLLYVDTDYL
DSISEDDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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