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Report for CCDS341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
341.1 Public Homo sapiens 1 ZCCHC17 24 110 108 CCDS HistoryNCBI Gene:51538Re-query CCDS DB by CCDS ID:341.1Re-query CCDS DB by GeneID:51538See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344147.10 ENSP00000343557.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344147.10Link to Ensembl Protein Viewer:ENSP00000343557.5Re-query CCDS DB by Nucleotide ID:ENST00000344147Re-query CCDS DB by Protein ID:ENSP00000343557
Original member Current member EBI ENST00000373714.5 ENSP00000362819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373714.5Link to Ensembl Protein Viewer:ENSP00000362819.1Re-query CCDS DB by Nucleotide ID:ENST00000373714Re-query CCDS DB by Protein ID:ENSP00000362819
Original member Current member NCBI NM_001282568.2 NP_001269497.1 Accepted alive Link to Nucleotide Sequence:NM_001282568.2Link to Protein Sequence:NP_001269497.1Re-query CCDS DB by Nucleotide ID:NM_001282568Re-query CCDS DB by Protein ID:NP_001269497Link to BLAST:NP_001269497.1
Original member Current member NCBI NM_016505.4 NP_057589.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016505.4Link to Protein Sequence:NP_057589.2Re-query CCDS DB by Nucleotide ID:NM_016505Re-query CCDS DB by Protein ID:NP_057589Link to BLAST:NP_057589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269497.1 241 Q9NP64-1 241 100% 0 0
NP_057589.2 241 Q9NP64-1 241 100% 0 0

Chromosomal Locations for CCDS 341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31310099 31310164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31319109 31319166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31337175 31337275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31338957 31339048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31346640 31346740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31348829 31348974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31364032 31364193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAATTCAGGAAGGCCTGAGACCATGGAAAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTG
CT
ATGGTGACAGACTATGGGGCCTTTATCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAAC
T
CATATGTCATCCTGTCGGGTGGATAAGCCCTCTGAGATAGTAGATGTTGGAGATAAAGTGTGGGTGAAG
CTT
ATTGGCCGAGAGATGAAAAATGATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCAAGGGA
CT
GGGAAAGACCTTGATCCCAACAATGTTATCATTGAGCAAGAAGAGAGGCGGAGGCGATCCTTCCAGGA
T
TACACTGGGCAGAAGATCACCCTTGAGGCTGTCTTGAACACTACCTGCAAGAAGTGTGGCTGTAAAGGC
CAC
TTTGCAAAAGATTGTTTCATGCAACCAGGTGGGACTAAATACTCTCTGATACCTGATGAGGAAGAGG
AA
AAGGAAGAGGCAAAGTCAGCAGAGTTTGAGAAGCCTGACCCTACAAGGAATCCTTCTAGAAAAAGAAA
G
AAGGAGAAGAAGAAAAAGAAACATAGAGATAGGAAGTCATCTGACTCTGACAGCTCAGACTCTGAGAGT
GAT
ACAGGCAAGAGGGCAAGGCACACATCAAAAGACAGCAAGGCAGCAAAGAAGAAGAAAAAGAAGAAGA
AG
CACAAGAAGAAGCACAAGGAGTGA


Translation (241 aa):
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK
L
IGRE
MKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKG
H
FAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKK
EKKKKKHRDRKSSDSDSSDSES
D
TGKRARHTSKDSKAAKKKKKKKKHKKKHKE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser