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Report for CCDS3397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3397.1 Public Homo sapiens 4 AFAP1 24 110 108 CCDS HistoryNCBI Gene:60312Re-query CCDS DB by CCDS ID:3397.1Re-query CCDS DB by GeneID:60312See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358461.6 ENSP00000351245.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358461.6Link to Ensembl Protein Viewer:ENSP00000351245.2Re-query CCDS DB by Nucleotide ID:ENST00000358461Re-query CCDS DB by Protein ID:ENSP00000351245
Original member Current member EBI ENST00000360265.9 ENSP00000353402.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360265.9Link to Ensembl Protein Viewer:ENSP00000353402.4Re-query CCDS DB by Nucleotide ID:ENST00000360265Re-query CCDS DB by Protein ID:ENSP00000353402
Original member Current member NCBI NM_001371090.1 NP_001358019.1 Accepted alive Link to Nucleotide Sequence:NM_001371090.1Link to Protein Sequence:NP_001358019.1Re-query CCDS DB by Nucleotide ID:NM_001371090Re-query CCDS DB by Protein ID:NP_001358019Link to BLAST:NP_001358019.1
Original member Current member NCBI NM_001371091.1 NP_001358020.1 Accepted alive Link to Nucleotide Sequence:NM_001371091.1Link to Protein Sequence:NP_001358020.1Re-query CCDS DB by Nucleotide ID:NM_001371091Re-query CCDS DB by Protein ID:NP_001358020Link to BLAST:NP_001358020.1
Original member Current member NCBI NM_198595.3 NP_940997.1 Accepted alive Link to Nucleotide Sequence:NM_198595.3Link to Protein Sequence:NP_940997.1Re-query CCDS DB by Nucleotide ID:NM_198595Re-query CCDS DB by Protein ID:NP_940997Link to BLAST:NP_940997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358019.1 730 Q8N556-1 730 100% 0 0
NP_001358020.1 730 Q8N556-1 730 100% 0 0
NP_940997.1 730 Q8N556-1 730 100% 0 0

Chromosomal Locations for CCDS 3397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 7763765 7763791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7768844 7769008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7772820 7773010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7774739 7774903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7778762 7778876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7786194 7786311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7793681 7793826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7800442 7800653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7809614 7809763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7816018 7816099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7819076 7819171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7838524 7838703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7843139 7843350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7855466 7855574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7868622 7868719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 7871952 7872078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGGAAGAGTTAATAGTTGAACTTCGTCTCTTTCTTGAACTCCTGGACCATGAATATCTAACCTCAACTG
TCAGGGAGAAAAAGGCAGTGATAACCAACATTCTGCTAAGAATACAGTCATCCAAAGGTTTTGATGTGAA
GGACCATGCTCAGAAGCAGGAGACCGCTAACAGCCTGCCAGCCCCTCCTCAGATGCCCCTGCCGGAGATC
CCTCAGCCCTGGCTGCCTCCTGACAGTGGGCCTCCACCATTGCCAACATCCTCCCTCCCAGAAGGTTATT
ATGAGGAAGCTGTGCCGCTGAGCCCCGGAAAAGCTCCGGAATACATCACATCAAATTATGATTCCGATGC
GATGAGCAGCTCTTATGAGTCGTATGATGAAGAGGAGGAGGATGGGAAGGGGAAGAAAACCCGGCACCAG
TGGCCCTCCGAGGAGGCCTCCATGGACCTGGTCAAGGACGCCAAAATCTGCGCCTTCCTGCTGCGGAAGA
AGCGGTTCGGCCAGTGGACCAAGTTGCTCTGCGTCATCAAAGACACCAAACTGCTGTGCTATAAAAGTTC
CAAGGACCAGCAGCCTCAGATGGAACTGCCACTCCAAGGCTGTAACATTACGTACATCCCGAAAGACAGC
AAAAAGAAGAAGCACGAGCTGAAGATTACTCAGCAGGGCACGGACCCGCTTGTTCTCGCCGTCCAGAGCA
AGGAACAGGCCGAGCAGTGGCTGAAGGTGATCAAAGAAGCCTACAGTGGTTGTAGTGGCCCCGTGGATTC
AGAGTGTCCTCCTCCACCAAGCTCCCCGGTGCACAAGGCAGAACTGGAGAAGAAACTGTCTTCAGAGAGA
CCCAGCTCAGATGGGGAGGGTGTTGTGGAAAATGGAATTACCACATGTAATGGAAAGGAGCAAGTGAAGA
GGAAGAAAAGTTCCAAATCAGAGGCCAAGGGCACTGTGTCGAAAGTCACTGGGAAAAAAATCACCAAGAT
CATCAGTCTGGGAAAGAAAAAGCCGTCCACAGACGAGCAGACCTCCTCAGCTGAGGAAGATGTTCCCACC
TGCGGCTATCTGAACGTGCTCTCCAACAGCCGCTGGCGAGAGCGCTGGTGCCGAGTGAAAGATAACAAGC
TCATTTTCCACAAGGACAGGACCGACCTGAAGACCCATATTGTGTCTATTCCGCTCCGTGGCTGCGAGGT
GATCCCGGGTTTGGATTCTAAACATCCTCTGACGTTCCGGCTGCTGCGCAACGGCCAGGAGGTTGCAGTA
TTGGAGGCATCTTCTTCTGAAGACATGGGCAGGTGGATTGGGATTTTACTCGCAGAGACGGGATCGTCCA
CAGACCCGGAGGCTCTGCACTATGACTACATTGATGTGGAGATGTCTGCAAGTGTCATTCAGACAGCCAA
ACAGACCTTCTGTTTCATGAACAGGCGTGTTATATCTGCTAACCCATATCTAGGGGGCACCTCCAACGGC
TATGCCCACCCCAGCGGGACGGCACTTCATTATGACGATGTCCCGTGCATCAACGGCTCGCTCAAGGGTA
AAAAGCCCCCCGTGGCGTCTAATGGGGTCACAGGAAAAGGGAAGACTCTGAGCAGTCAGCCAAAGAAAGC
GGATCCCGCGGCTGTTGTGAAAAGGACGGGTTCGAATGCTGCCCAGTACAAGTATGGCAAGAACCGGGTA
GAAGCAGATGCCAAGCGGCTACAGACCAAAGAGGAGGAGCTGCTGAAGAGGAAAGAGGCCCTGCGGAATA
GGCTGGCCCAGCTCCGCAAGGAAAGAAAAGACCTTCGAGCGGCTATTGAAGTGAACGCCGGCAGGAAGCC
GCAGGCGATCCTGGAGGAGAAGCTGAAGCAGCTGGAGGAGGAGTGCCGGCAGAAGGAGGCGGAGCGTGTC
AGCCTGGAGCTGGAGCTGACGGAGGTCAAGGAGAGCCTGAAGAAAGCGCTGGCGGGCGGAGTCACCCTGG
GGCTGGCCATCGAGCCCAAGTCAGGGACATCGAGTCCACAGTCTCCAGTGTTCCGGCACCGGACCCTGGA
AAACTCGCCCATCTCCAGCTGTGACACCAGTGACACCGAGGGCCCCGTGCCGGTGAACAGCGCGGCCGTC
TTGAAGAAGAGCCAGGCTGCCCCGGGCAGCTCCCCCTGCCGAGGGCATGTGCTGCGGAAGGCCAAGGAAT
GGGAATTGAAGAACGGGACCTAG

Translation (730 aa):
MEELIVELRLFLELLDHEYLTSTVREKKAVITNILLRIQSSKGFDVKDHAQKQETANSLPAPPQMPLPEI
PQPWLPPDSGPPPLPTSSLPEGYYEEAVPLSPGKAPEYITSNYDSDAMSSSYESYDEEEEDGKGKKTRHQ
WPSEEASMDLVKDAKICAFLLRKKRFGQWTKLLCVIKDTKLLCYKSSKDQQPQMELPLQGCNITYIPKDS
KKKKHELKITQQGTDPLVLAVQSKEQAEQWLKVIKEAYSGCSGPVDSECPPPPSSPVHKAELEKKLSSER
PSSDGEGVVENGITTCNGKEQVKRKKSSKSEAKGTVSKVTGKKITKIISLGKKKPSTDEQTSSAEEDVPT
CGYLNVLSNSRWRERWCRVKDNKLIFHKDRTDLKTHIVSIPLRGCEVIPGLDSKHPLTFRLLRNGQEVAV
LEASSSEDMGRWIGILLAETGSSTDPEALHYDYIDVEMSASVIQTAKQTFCFMNRRVISANPYLGGTSNG
YAHPSGTALHYDDVPCINGSLKGKKPPVASNGVTGKGKTLSSQPKKADPAAVVKRTGSNAAQYKYGKNRV
EADAKRLQTKEEELLKRKEALRNRLAQLRKERKDLRAAIEVNAGRKPQAILEEKLKQLEEECRQKEAERV
SLELELTEVKESLKKALAGGVTLGLAIEPKSGTSSPQSPVFRHRTLENSPISSCDTSDTEGPVPVNSAAV
LKKSQAAPGSSPCRGHVLRKAKEWELKNGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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