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Report for CCDS33945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33945.1 Public Homo sapiens 4 NOP14 24 110 108 CCDS HistoryNCBI Gene:8602Re-query CCDS DB by CCDS ID:33945.1Re-query CCDS DB by GeneID:8602See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314262.10 ENSP00000315674.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314262.10Link to Ensembl Protein Viewer:ENSP00000315674.6Re-query CCDS DB by Nucleotide ID:ENST00000314262Re-query CCDS DB by Protein ID:ENSP00000315674
Original member Current member EBI ENST00000416614.7 ENSP00000405068.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416614.7Link to Ensembl Protein Viewer:ENSP00000405068.2Re-query CCDS DB by Nucleotide ID:ENST00000416614Re-query CCDS DB by Protein ID:ENSP00000405068
Original member Current member NCBI NM_001291978.2 NP_001278907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291978.2Link to Protein Sequence:NP_001278907.1Re-query CCDS DB by Nucleotide ID:NM_001291978Re-query CCDS DB by Protein ID:NP_001278907Link to BLAST:NP_001278907.1
Original member Current member NCBI NM_003703.3 NP_003694.1 Accepted alive Link to Nucleotide Sequence:NM_003703.3Link to Protein Sequence:NP_003694.1Re-query CCDS DB by Nucleotide ID:NM_003703Re-query CCDS DB by Protein ID:NP_003694Link to BLAST:NP_003694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278907.1 857 P78316-1 857 100% 0 0
NP_003694.1 857 P78316-1 857 100% 0 0

Chromosomal Locations for CCDS 33945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2938831 2938930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2939188 2939343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2939527 2939645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2941582 2941729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2942192 2942351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2944073 2944226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2945128 2945229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2946412 2946547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2947526 2947611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2948278 2948408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2949934 2950213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2951114 2951245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2952275 2952397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2953511 2953645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2954424 2954563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2956670 2956811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2957606 2957740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2963125 2963319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGGCGAAGGCGAAGAAGGTCGGGGCGCGAAGGAAGGCCTCCGGGGCGCCGGCGGGAGCGCGAGGGGGCC
CGGCGAAGGCCAACTCCAATCCGTTCGAGGTGAAAGTTAACAGGCAGAAGTTCCAGATCCTGGGCCGGAA
GACGCGCCACGACGTGGGACTGCCCGGGGTGTCTCGCGCACGGGCCCTCAGGAAGCGTACACAGACTTTA
CTAAAAGAGTACAAAGAAAGGGATAAATCCAATGTATTCAGAGATAAACGCTTCGGAGAATACAACAGCA
ACATGAGCCCCGAGGAGAAGATGATGAAGAGGTTTGCTCTGGAACAGCAGCGACATCATGAGAAAAAAAG
CATCTACAATCTAAATGAAGATGAAGAATTGACTCATTATGGCCAGTCTTTGGCAGACATCGAGAAGCAT
AATGACATTGTGGACAGTGACAGCGATGCTGAGGATCGAGGAACGTTGTCTGCTGAGCTGACTGCTGCCC
ACTTTGGAGGAGGCGGTGGGCTCCTTCACAAGAAGACTCAACAGGAAGGCGAGGAGCGGGAGAAACCGAA
GTCCCGGAAAGAGCTGATTGAAGAGCTCATTGCCAAGTCAAAACAAGAGAAGAGGGAGAGACAAGCTCAA
CGAGAAGATGCCCTCGAGCTCACGGAGAAGCTAGACCAAGACTGGAAAGAAATTCAGACTCTCCTGTCCC
ACAAAACTCCCAAGTCAGAGAACAGAGACAAAAAGGAAAAACCCAAGCCCGATGCATATGACATGATGGT
TCGCGAGCTTGGCTTTGAAATGAAGGCGCAGCCCTCTAACAGGATGAAGACGGAGGCAGAATTGGCAAAG
GAAGAGCAGGAGCACCTCAGGAAGCTGGAGGCTGAGAGACTTCGAAGAATGCTTGGAAAGGATGAGGATG
AAAATGTTAAGAAACCAAAACATATGTCAGCAGATGATCTGAATGATGGCTTCGTGCTAGATAAAGATGA
CAGGCGTTTGCTTTCCTACAAAGATGGAAAGATGAATGTCGAGGAAGATGTCCAGGAAGAGCAAAGCAAG
GAAGCCAGTGACCCTGAGAGCAACGAGGAAGAAGGTGACAGTTCAGGCGGGGAGGACACAGAGGAGAGCG
ACAGCCCAGATAGCCACTTGGACCTGGAATCCAACGTGGAGAGTGAGGAAGAAAACGAGAAGCCAGCAAA
AGAGCAGAGGCAGACTCCTGGGAAAGGGTTGATAAGCGGCAAGGAAAGAGCTGGAAAAGCTACCAGAGAC
GAGCTGCCCTACACGTTCGCAGCCCCTGAATCCTATGAGGAACTGAGATCTCTGTTGTTAGGAAGATCGA
TGGAAGAGCAGCTTTTGGTGGTGGAGAGAATTCAGAAGTGCAACCACCCGAGTCTCGCAGAAGGAAACAA
AGCAAAATTAGAAAAACTGTTTGGCTTTCTTTTGGAATACGTTGGCGATTTGGCTACAGATGACCCACCA
GACCTCACAGTCATTGATAAGTTGGTTGTGCACTTATATCATCTTTGCCAGATGTTTCCTGAATCTGCAA
GTGACGCTATCAAATTTGTTCTCCGAGATGCGATGCATGAGATGGAAGAAATGATTGAGACCAAAGGCCG
GGCGGCATTGCCAGGGTTGGATGTGCTCATTTATTTGAAAATCACTGGGCTGCTATTTCCAACTTCCGAC
TTCTGGCACCCAGTGGTGACCCCTGCCCTCGTGTGCCTCAGTCAGCTGCTCACCAAGTGCCCCATCCTGT
CCCTCCAGGACGTGGTGAAGGGCCTGTTCGTGTGCTGCCTGTTCCTGGAGTATGTGGCTTTGTCCCAGAG
GTTTATACCTGAGCTTATTAATTTTCTTCTTGGGATTCTTTACATAGCAACTCCAAACAAAGCAAGCCAA
GGTTCCACTCTGGTGCACCCTTTCAGAGCGCTTGGGAAGAACTCGGAACTGCTCGTGGTGTCTGCTAGAG
AGGATGTGGCCACGTGGCAGCAGAGCAGCCTCTCCCTCCGCTGGGCGAGTAGACTGAGGGCCCCAACTTC
GACAGAGGCCAATCACATCCGACTGTCCTGCCTGGCTGTGGGCCTGGCCCTGCTGAAGCGCTGCGTGCTC
ATGTACGGGTCCCTGCCATCCTTCCACGCCATCATGGGGCCTCTCCAAGCCCTCCTCACGGATCACCTGG
CGGACTGCAGCCACCCGCAGGAGCTCCAGGAGCTGTGTCAGAGCACACTGACCGAAATGGAAAGCCAGAA
GCAGCTCTGCCGGCCGCTGACCTGTGAGAAGAGCAAGCCTGTCCCACTGAAGCTTTTCACACCCCGGCTG
GTCAAAGTCCTCGAGTTTGGAAGAAAACAAGGCAGTAGTAAGGAGGAACAGGAAAGGAAGAGGCTGATCC
ACAAACACAAGCGTGAATTTAAAGGGGCCGTTCGAGAAATCCGCAAGGACAATCAGTTCCTGGCGAGGAT
GCAACTCTCAGAAATCATGGAACGGGATGCGGAAAGAAAGCGGAAAGTAAAGCAGCTTTTTAACAGCCTG
GCTACACAGGAAGGCGAATGGAAGGCTCTGAAGAGGAAAAAGTTCAAAAAATAA

Translation (857 aa):
MAKAKKVGARRKASGAPAGARGGPAKANSNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTL
LKEYKERDKSNVFRDKRFGEYNSNMSPEEKMMKRFALEQQRHHEKKSIYNLNEDEELTHYGQSLADIEKH
NDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKKTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQ
REDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKPDAYDMMVRELGFEMKAQPSNRMKTEAELAK
EEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSYKDGKMNVEEDVQEEQSK
EASDPESNEEEGDSSGGEDTEESDSPDSHLDLESNVESEEENEKPAKEQRQTPGKGLISGKERAGKATRD
ELPYTFAAPESYEELRSLLLGRSMEEQLLVVERIQKCNHPSLAEGNKAKLEKLFGFLLEYVGDLATDDPP
DLTVIDKLVVHLYHLCQMFPESASDAIKFVLRDAMHEMEEMIETKGRAALPGLDVLIYLKITGLLFPTSD
FWHPVVTPALVCLSQLLTKCPILSLQDVVKGLFVCCLFLEYVALSQRFIPELINFLLGILYIATPNKASQ
GSTLVHPFRALGKNSELLVVSAREDVATWQQSSLSLRWASRLRAPTSTEANHIRLSCLAVGLALLKRCVL
MYGSLPSFHAIMGPLQALLTDHLADCSHPQELQELCQSTLTEMESQKQLCRPLTCEKSKPVPLKLFTPRL
VKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFLARMQLSEIMERDAERKRKVKQLFNSL
ATQEGEWKALKRKKFKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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