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Report for CCDS33934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33934.1 Public Homo sapiens 4 SLC26A1 24 110 108 CCDS HistoryNCBI Gene:10861Re-query CCDS DB by CCDS ID:33934.1Re-query CCDS DB by GeneID:10861See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361661.6 ENSP00000354721.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361661.6Link to Ensembl Protein Viewer:ENSP00000354721.2Re-query CCDS DB by Nucleotide ID:ENST00000361661Re-query CCDS DB by Protein ID:ENSP00000354721
Original member Current member EBI ENST00000398516.3 ENSP00000381528.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398516.3Link to Ensembl Protein Viewer:ENSP00000381528.2Re-query CCDS DB by Nucleotide ID:ENST00000398516Re-query CCDS DB by Protein ID:ENSP00000381528
Original member Current member NCBI NM_022042.4 NP_071325.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022042.4Link to Protein Sequence:NP_071325.2Re-query CCDS DB by Nucleotide ID:NM_022042Re-query CCDS DB by Protein ID:NP_071325Link to BLAST:NP_071325.2
Original member Current member NCBI NM_213613.4 NP_998778.1 Accepted alive Link to Nucleotide Sequence:NM_213613.4Link to Protein Sequence:NP_998778.1Re-query CCDS DB by Nucleotide ID:NM_213613Re-query CCDS DB by Protein ID:NP_998778Link to BLAST:NP_998778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071325.2 701 Q9H2B4-1 701 100% 0 0
NP_998778.1 701 Q9H2B4-1 701 100% 0 0

Chromosomal Locations for CCDS 33934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 988833 990362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 991128 991703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGACGAGTCCCCTGAGCCTCTGCAGCAGGGCAGAGGGCCGGTGCCGGTCCGACGGCAGCGCCCAGCAC
CCCGGGGTCTGCGTGAGATGCTGAAGGCCAGGCTGTGGTGCAGCTGCTCGTGCAGTGTGCTGTGCGTCCG
GGCGCTGGTGCAGGACCTGCTCCCCGCCACGCGCTGGCTGCGTCAGTACCGCCCGCGGGAGTACCTGGCA
GGCGACGTCATGTCTGGGCTGGTCATCGGCATCATCCTGGTGCCGCAGGCCATCGCCTACTCATTGCTGG
CCGGGCTGCAGCCCATCTACAGCCTCTATACGTCCTTCTTCGCCAACCTCATCTACTTCCTCATGGGCAC
CTCACGGCATGTCTCCGTGGGCATCTTCAGCCTGCTTTGCCTCATGGTGGGGCAGGTGGTGGACCGGGAG
CTCCAGCTGGCCGGCTTTGACCCCTCCCAGGACGGCCTGCAGCCCGGAGCCAACAGCAGCACCCTCAACG
GCTCGGCTGCCATGCTGGACTGCGGGCGTGACTGCTACGCCATCCGTGTCGCCACCGCCCTCACGCTGAT
GACCGGGCTTTACCAGGTCCTCATGGGCGTCCTCCGGCTGGGCTTCGTGTCCGCCTACCTCTCACAGCCA
CTGCTCGATGGCTTTGCCATGGGGGCCTCCGTGACCATCCTGACCTCGCAGCTCAAACACCTGCTGGGCG
TGCGGATCCCGCGGCACCAGGGGCCCGGCATGGTGGTCCTCACATGGCTGAGCCTGCTGCGCGGCGCCGG
GCAGGCCAACGTGTGCGACGTGGTCACCAGCACGGTGTGCCTGGCGGTGCTGCTAGCCGCGAAGGAGCTC
TCAGACCGCTACCGACACCGCCTGAGGGTGCCGCTGCCCACGGAGCTGCTGGTCATCGTGGTGGCCACAC
TCGTGTCGCACTTCGGGCAGCTCCACAAGCGCTTTGGCTCGAGCGTGGCTGGCGACATCCCCACGGGTTT
CATGCCCCCTCAGGTCCCAGAGCCCAGGCTGATGCAGCGTGTGGCTTTGGATGCCGTGGCCCTGGCCCTC
GTGGCTGCCGCCTTCTCCATCTCGCTGGCGGAGATGTTCGCCCGCAGTCACGGCTACTCTGTGCGTGCCA
ACCAGGAGCTGCTGGCTGTGGGCTGCTGCAACGTGCTACCCGCCTTCCTCCACTGCTTCGCCACCAGCGC
CGCCCTGGCCAAGAGCCTGGTGAAGACAGCCACTGGCTGCCGGACACAGCTGTCCAGCGTGGTCAGCGCC
ACCGTGGTGCTGCTGGTGCTGCTGGCGCTGGCACCGCTGTTCCACGACCTACAGCGAAGCGTGCTGGCCT
GCGTCATCGTGGTCAGCCTGCGGGGGGCCCTGCGCAAGGTGTGGGACCTCCCGCGGCTGTGGCGGATGAG
CCCGGCTGACGCGCTGGTCTGGGCAGGCACCGCGGCCACCTGTATGCTGGTCAGCACAGAGGCCGGGCTG
CTGGCTGGCGTCATCCTCTCGCTGCTCAGCCTGGCCGGCCGCACCCAACGCCCACGCACCGCCCTGCTGG
CCCGCATCGGGGACACGGCCTTCTACGAGGATGCCACAGAGTTCGAGGGCCTCGTCCCTGAGCCCGGCGT
GCGGGTGTTCCGCTTTGGGGGGCCGCTGTACTATGCCAACAAGGACTTCTTCCTGCAGTCACTCTACAGC
CTCACGGGGCTGGACGCAGGGTGCATGGCTGCCAGGAGGAAGGAGGGGGGCTCAGAGACGGGGGTCGGTG
AGGGAGGCCCTGCCCAGGGCGAGGACCTGGGCCCGGTTAGCACCAGGGCTGCGCTGGTGCCCGCAGCGGC
CGGCTTCCACACAGTGGTCATCGACTGCGCCCCGCTGCTGTTCCTAGACGCAGCCGGTGTGAGCACGCTG
CAGGACCTGCGCCGAGACTACGGGGCCCTGGGCATCAGCCTGCTGCTAGCCTGCTGCAGCCCGCCTGTGA
GAGACATTCTGAGCAGAGGAGGCTTCCTCGGGGAGGGCCCCGGGGACACGGCTGAGGAGGAGCAGCTGTT
CCTCAGTGTGCACGATGCCGTGCAGACAGCACGAGCCCGCCACAGGGAGCTGGAGGCCACCGATGCCCAT
CTGTAG

Translation (701 aa):
MDESPEPLQQGRGPVPVRRQRPAPRGLREMLKARLWCSCSCSVLCVRALVQDLLPATRWLRQYRPREYLA
GDVMSGLVIGIILVPQAIAYSLLAGLQPIYSLYTSFFANLIYFLMGTSRHVSVGIFSLLCLMVGQVVDRE
LQLAGFDPSQDGLQPGANSSTLNGSAAMLDCGRDCYAIRVATALTLMTGLYQVLMGVLRLGFVSAYLSQP
LLDGFAMGASVTILTSQLKHLLGVRIPRHQGPGMVVLTWLSLLRGAGQANVCDVVTSTVCLAVLLAAKEL
SDRYRHRLRVPLPTELLVIVVATLVSHFGQLHKRFGSSVAGDIPTGFMPPQVPEPRLMQRVALDAVALAL
VAAAFSISLAEMFARSHGYSVRANQELLAVGCCNVLPAFLHCFATSAALAKSLVKTATGCRTQLSSVVSA
TVVLLVLLALAPLFHDLQRSVLACVIVVSLRGALRKVWDLPRLWRMSPADALVWAGTAATCMLVSTEAGL
LAGVILSLLSLAGRTQRPRTALLARIGDTAFYEDATEFEGLVPEPGVRVFRFGGPLYYANKDFFLQSLYS
LTGLDAGCMAARRKEGGSETGVGEGGPAQGEDLGPVSTRAALVPAAAGFHTVVIDCAPLLFLDAAGVSTL
QDLRRDYGALGISLLLACCSPPVRDILSRGGFLGEGPGDTAEEEQLFLSVHDAVQTARARHRELEATDAH
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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